Skyline Targeted Mass Spec Environment 
Targeted Proteomics CourseRegister now to reserve your seat at the Skyline User Group Meeting at ASMS
Indianapolis, IN - Sunday, June 4th
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Optimizing Large Scale DIA with Skyline

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Summer Short Course #21: Case Studies in Quantitative Proteomics at ASMS, Indianapolis, IN (June 3-4, 2017) - Course description

Summer Skyline User Group Meeting at ASMS, Indianapolis, IN (June 4, 2017) - Register Now!

Fall Targeted Proteomics Course at PRBB, Barcelona (November 13-17, 2017) - Register Now!

Fall Quantitative Proteomic Workshop at HUPO World Congress Dublin, Ireland (Sept 16, 2017)

Full

Summer DIA/SWATH Proteomics Course at ETH, Zurich (June 26-30, 2017)

Summer Targeted Proteomics Course at University of Washington Seattle WA (July 24-28, 2017)

Past

Spring Computation & Statistics for Targeted Proteomics Course at Northeastern University Boston, MA (May 1-3, 2017)

Spring Targeted Proteomics Course at Buck Institute in the north San Francisco Bay area, CA. (February 27th - March 3rd, 2017)

Spring Design and Analysis of Quantitative Proteomic Experiments at US HUPO San Diego, CA (March 18-19, 2017)

Fall 2016 ACGT Proteomics Symposium and Skyline Workshop at WITS Univeristy in Johanessburg, SA (December 5-8, 2016)

Fall Targeted Proteomics Course at PRBB, Barcelona (November 14-18, 2016)

Summer European Summer School on: Advanced Proteomics in Bressanone/Brixen, Italy (July 31 - August 6, 2016)

Summer Targeted Proteomics Course at University of Washington Seattle WA (July 18-22, 2016)

Summer Skyline User Group Meeting at ASMS, San Antonio, TX (June 5, 2016) - watch the videos

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Skyline User Group Meeting
2016



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Week-long Targeted Proteomics
Course 2016

Recently Published

Bereman, Journal of Proteome Research - An Automated Pipeline to Monitor System Performance in Liquid Chromatography Tandem Mass Spectrometry Proteomic Experiments
[abstract]

Egertson, Nature Protocols - Multiplexed peptide analysis using data-independent acquisition and Skyline
[abstract]

Abbatiello, Mollecular Cellular Proteomics - Large-scale inter-laboratory study to develop, analytically validate and apply highly multiplexed, quantitative peptide assays to measure cancer-relevant proteins in plasma
[abstract]

Sharma, Journal of Proteome Research - Panorama: A Targeted Proteomics Knowledge Base
[abstract]

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Dashboard
Skyline adoption and use information

Panorama
Create a new project for your lab or group on PanoramaWeb hosted by the University of Washington

ProteoWizard
Skyline source code is available under Apache 2.0 License and part of the ProteoWizard project (mzML and mzXML conversion)

Spectral Library Links
PeptideAtlas
NIST
GPM