Skyline Targeted Mass Spec Environment 
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Small Molecule Research With Skyline

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Winter Practical Proteomics with Skyline Short Course at MSACL, Palm Springs, CA (January 21-23, 2018) - Register Now!

Winter Pre-Lorne Workshop at University of Melbourne, Australia (January 29-31, 2018) Seats limited; first come - first served - Register Now!

Spring Targeted Proteomics Course at Buck Institute in the north San Francisco Bay area, CA. (April 2 - 6, 2018) - Register Now!

Spring Computation & Statistics for Mass Spec & Proteomics Course at Northeastern U. Boston, MA (April 30 - May 11, 2018) - Register Now!

Full

Fall Targeted Proteomics Course at PRBB, Barcelona (November 13-17, 2017)

Past

Fall Quantitative Proteomic Workshop at HUPO World Congress Dublin, Ireland (Sept 16-17, 2017)

Summer Targeted Proteomics Course at University of Washington Seattle WA (July 24-28, 2017)

Summer DIA/SWATH Proteomics Course at ETH, Zurich (June 26-30, 2017)

Summer Skyline User Group Meeting at ASMS, Indianapolis, IN (June 4, 2017) - watch the videos

Summer Short Course #21: Case Studies in Quantitative Proteomics at ASMS, Indianapolis, IN (June 3-4, 2017)

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Skyline User Group Meeting
2017



Watch the Videos
Week-long Targeted Proteomics
Course 2016

Recently Published

Pino, Mass Spectrometry Reviews - The Skyline ecosystem: Informatics for quantitative mass spectrometry proteomics
[abstract]

Bereman, Journal of Proteome Research - An Automated Pipeline to Monitor System Performance in Liquid Chromatography Tandem Mass Spectrometry Proteomic Experiments
[abstract]

Egertson, Nature Protocols - Multiplexed peptide analysis using data-independent acquisition and Skyline
[abstract]

Abbatiello, Mollecular Cellular Proteomics - Large-scale inter-laboratory study to develop, analytically validate and apply highly multiplexed, quantitative peptide assays to measure cancer-relevant proteins in plasma
[abstract]

Sharma, Journal of Proteome Research - Panorama: A Targeted Proteomics Knowledge Base
[abstract]

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Dashboard
Skyline adoption and use information

Panorama
Create a new project for your lab or group on PanoramaWeb hosted by the University of Washington

ProteoWizard
Skyline source code is available under Apache 2.0 License and part of the ProteoWizard project (mzML and mzXML conversion)

Spectral Library Links
PeptideAtlas
NIST
GPM