Build AlphaPeptDeep Library

Skyline
You can build AlphaPeptDeep AI-generated libraries in Skyline using the following steps:
 
Select "Peptide Settings..." in the "Settings" menu to bring up the "Peptide Settings" dialog.
 
In the "Peptide Settings" dialog, select "Library" tab and click "Build..." to open the "Build Library" dialog.
 
 
Provide a name for the library in the "Name:" text box, provide a valid output location for saving the library in the "Output path:" text box.
Select "AlphaPeptDeep" radio button as the "Data source" then  click "Finish"