Skyline Batch is an application that automates a common Skyline workflow for batch processing Skyline documents. It interacts with Skyline through the command-line, allowing it to import data into a template document, export reports, and run R scripts on those reports without bringing up the Skyline user interface.

 

Install Skyline Batch for Skyline 20.2 or later, or Skyline-daily (20.2.1 or later)

Skyline Batch Documentation

 

Skyline Batch Tutorials

Learn how to use Skyline Batch by completing the new tutorials on the Webinar 14 and 15 pages:

Webinar 14: Large Scale DIA with Skyline

Webinar 15: Optimizing Large Scale DIA with Skyline

 

 

Skyline Batch Release Notes

 

Skyline Batch 21.1.0.146 (May 26th, 2021)

  • Added a "download files only" run option
  • Allow waiting configurations to be unchecked and removed from the current batch run
  • Log improvements
  • Data download bug fixes

 

Skyline Batch 20.2.0.475 (Apr. 20th, 2021)

  • Can download data files from an FTP server
  • Added support for different number formats

 

Skyline Batch 20.2.0.464 (Apr. 9th, 2021)

  • Import configurations by double-clicking a Skyline Batch Configuration file
  • No longer requires a Skyline report file for reports that already exist in the template document
  • Improved file detection for sharing configurations across computers 

 

Skyline Batch 20.2.0.453 (Mar. 29th, 2021)

  • New option for Skyline file refinement
  • Supports using refined files as templates for other configurations
  • Added ability to import annotations
  • Bug fixes for finding R installations, logging, and more

 

Skyline Batch 20.2.0.398 (Feb. 2nd, 2021)

  • Runs multiple Skyline workflows sequentially
  • Displays log of current run
  • Allows different configurations to use different Skyline installations
  • Supports running R scripts with any version of R

 

 


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