 | | Skyline Batch is an application that automates a common Skyline workflow for batch processing Skyline documents. It interacts with Skyline through the command-line, allowing it to import data into a template document, export reports, and run R scripts on those reports without bringing up the Skyline user interface. |
Install Skyline Batch for Skyline 20.2 or later, or Skyline-daily (20.2.1 or later)
Skyline Batch Documentation
Skyline Batch Webinar
A hands-on demonstration displaying the depth of Skyline Batch as well as new features:
Webinar 20: Using Skyline Batch for Large-Scale DIA
Skyline Batch Tutorials
Learn how to use Skyline Batch by completing the supplementary tutorials on the Webinar 14 and 15 pages:
Webinar 14: Large Scale DIA with Skyline
Webinar 15: Optimizing Large Scale DIA with Skyline
Skyline Batch Release Notes
Skyline Batch 21.1.0.306 (Nov. 2nd, 2021)
-
Remote file sources make downloading files from similar locations easier
-
Added undo/redo functionality for changes to the configuration list
-
Bug fixes for adding R scripts and downloading files from Panorama
Skyline Batch 21.1.0.187 (July 6th, 2021)
-
Skyline template files, annotation files, data files, and R scripts can now be downloaded from Panorama
-
New download data files dialog that includes an interactive list of the files to be downloaded
-
Improved Skyline Batch configuration files that are more easily readable in a text editor
-
Updated run button options
Skyline Batch 21.1.0.146 (May 26th, 2021)
-
Added a "download files only" run option
-
Allow waiting configurations to be unchecked and removed from the current batch run
-
Log improvements
-
Data download bug fixes
Skyline Batch 20.2.0.475 (Apr. 20th, 2021)
-
Can download data files from an FTP server
-
Added support for different number formats
Skyline Batch 20.2.0.464 (Apr. 9th, 2021)
-
Import configurations by double-clicking a Skyline Batch Configuration file
-
No longer requires a Skyline report file for reports that already exist in the template document
-
Improved file detection for sharing configurations across computers
Skyline Batch 20.2.0.453 (Mar. 29th, 2021)
-
New option for Skyline file refinement
-
Supports using refined files as templates for other configurations
-
Added ability to import annotations
-
Bug fixes for finding R installations, logging, and more
Skyline Batch 20.2.0.398 (Feb. 2nd, 2021)
-
Runs multiple Skyline workflows sequentially
-
Displays log of current run
-
Allows different configurations to use different Skyline installations
-
Supports running R scripts with any version of R