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Library downloadr benoni2022-04-01Nick Shulman2022-04-01
Prosit mirror dotp brokenTobi2022-03-25Tobi2022-03-31
Creating a Spectral Library from Existing Data Setmadeline colley2022-03-30Brian Pratt2022-03-30
Export Report Extremely Slowgraham delafield2022-03-29graham delafield2022-03-30
Suggestioncarlos penno2022-03-29Brian Pratt2022-03-29
Fill-in Transition List Table Gone?kchiti2022-03-23Brian Pratt2022-03-29
Generating optimization method for small moleculesWilliam2022-03-28Nick Shulman2022-03-28
Error during File opendawn dufield2022-03-28Nick Shulman2022-03-28
HRMS batch analysisnicholas clanton2022-03-24nicholas clanton2022-03-24
cannot find and use modifications present in unimodpavel shliaha2022-03-24Nick Shulman2022-03-24
Questions about the spectral library build by DIA-NN speclib file.andyzcq@gmail.com2022-03-20andyzcq@gmail.com2022-03-22
Any algorithm differences regarding the extraction of SWATH and Scanning SWATH data by skyline.Winnie2022-03-15Winnie2022-03-20
How could I see the mass spectrometry in the right window?12404707512022-03-1912404707512022-03-19
Prosit and propietary dataNiels van den Broek2022-03-16Brendan MacLean2022-03-18
Transition List Not Working In New Versionkaitlyn b donohoo2022-02-22Brian Pratt2022-03-18
Chromatogram not loadingprajita2022-03-17Nick Shulman2022-03-17
How to export figure legends and Skyline transitions' color codeswangqingok@gmail.com2022-03-16Nick Shulman2022-03-16
Add support for DIA-NNYishai2022-03-14Nick Shulman2022-03-14
Chromatogram information unavailable - Metabolomicserin weisenhorn2022-02-09Nick Shulman2022-03-14
CE optimization transition list export does not workbkr2022-03-13bkr2022-03-13
SureQuant Transition Settingsromeally@jhmi.edu2022-03-11Nick Shulman2022-03-12
Difference in intensity between labelled peak and just its precursorssa8252022-03-12Nick Shulman2022-03-12
Small molecule (non-global) standard concentrationsjrenders2020-09-01Nick Shulman2022-03-10
SureQuant Integration Errorsromeally@jhmi.edu2022-03-10Nick Shulman2022-03-10
ion mobility issue in Bruker prm-PASEF method setupruoyu wu2022-02-10ruoyu wu2022-03-09
"chromatogram information unavailable" after importing .wiff fileheather eastwood2022-03-08Nick Shulman2022-03-08
Decoys not showing up with dotp values from Prosit librarycm7482022-03-07Nick Shulman2022-03-08
Failure to upgrade from 21.1 to 21.2 or re-install from newly downloaded Setup.exegustavo palacios2022-03-07gustavo palacios2022-03-08
A protein sequence cannot contain the character 'z' at line 230nicrdo2022-03-07nicrdo2022-03-07
problem with DDA search tutorialzahra mashhadi2022-03-02Nick Shulman2022-03-02
Measure Peak USP/EP resolution, tailing factor, Theoretical Plateszhuhongbin3212022-03-01Nick Shulman2022-03-02
A fixed and variable modification on the same amino acidlaura declerck2016-07-13hassan hijazi2022-03-02
Peak ranking interpretation.wangqingok@gmail.com2022-03-01Nick Shulman2022-03-01
Batch import separate negative and positive polarity files into same replicatematthias schittmayer2022-03-01Brian Pratt2022-03-01
Skyline Can Not Update on Win11wangqingok@gmail.com2022-02-28Nick Shulman2022-02-28
Trouble importing LCMS .d filesasaha762022-02-28Nick Shulman2022-02-28
Trouble importing LCMS .d filesasaha762022-02-28asaha762022-02-28
Modifications for this peptide do not match current document settings.licky lck2022-02-28licky lck2022-02-28
Can't upload SRM data into skyline anymoreboycea2022-02-25Nick Shulman2022-02-25
Sciex 7500 CE/DP optimization, which equation to use?Erik2022-02-24Erik2022-02-25
Basic normalizationjm007@uw.edu2022-02-24Nick Shulman2022-02-24
Feature request: single molecule/peptide re-integrationJuan C. Rojas E.2022-02-10accounting2022-02-24
How to get the right FWHM value of target peptide precursors from DIA file by SkylineWinnie2022-02-21Brendan MacLean2022-02-23
Using subset of target peptides as iRT peptidesErik2022-02-23Nick Shulman2022-02-23
N15 proteome-wide DIA data scoringaf12342022-02-18af12342022-02-23
Not all targeted peptides labeled (15N)silasmellor2022-02-22silasmellor2022-02-22
Library Match - Forcing spectrum selectionr smith2022-02-21Nick Shulman2022-02-22
Multiplex Orbitrap Data - Cannot get Skyline to Recognize SIL Peptide Transitionslamarj2022-02-18Nick Shulman2022-02-18
Incorrect Precursor mz imported for polarity switch transition list (order-dependent)alwest2022-02-16Brian Pratt2022-02-18
Import results - set time range of chromatogram to be importedm luzarowski2022-02-16m luzarowski2022-02-17
Edit>Insert>Transition List, setting to change back to old format?bstewart2022-02-16Brian Pratt2022-02-16
Transition list issuesnatalia goykhman2022-02-13natalia goykhman2022-02-16
CCS calculation from mobility value and normalize/calibrate mobility across replicatesmadeline colley2022-02-11Brian Pratt2022-02-15
Problem with transition list of light and heavy labelled small moleculesLisa Panzenboeck2022-02-14Lisa Panzenboeck2022-02-15
Reporting asymmetry factor and lock mass stabilitynatalia goykhman2022-02-13natalia goykhman2022-02-15
Questions regarding chromatogram library dotp value in Skylineroman sakson2022-02-12roman sakson2022-02-12
The output file of the extracted chromatogram appear garbledWinnie2022-02-09Winnie2022-02-11
Newest Skyline version seems to be broken for Sciex Tripletof MRMHR method creation within Analyst TFJenny Albanese2022-02-11Kaipo Tamura2022-02-11
Individual Regression Options for Peptides/Precursorssascha2022-02-10sascha2022-02-10
Import peak boundaries for small moleculesJuan C. Rojas E.2022-02-10Nick Shulman2022-02-10
Ratio and transition issue in MRM Skyline documenthasmik@broadinstitute.org2022-02-09hasmik@broadinstitute.org2022-02-10
Library building small molecules MS1 filtering Hres datap de blaauw2022-02-09Brian Pratt2022-02-09
Could not find precursorId error when trying to use BlibBuild to convert .speclib library to .blibrwwwq2022-02-06rwwwq2022-02-07
Unable to read mzML file?mnt2022-02-05mnt2022-02-06
Missing remove transition peaks... for document grid actionsroman sakson2022-02-06roman sakson2022-02-06
Keybord shortcut for setting non-quantitative transitionJuan C. Rojas E.2022-02-01Brendan MacLean2022-02-03
Analyze Agilent SIM data with Skyline?wangqingok@gmail.com2022-02-02Nick Shulman2022-02-03
Peak picking and non-quantitative transitionsroman sakson2022-02-02roman sakson2022-02-02
"error reading spectrum" of .mzML files from OpenChrom, original data files are Agilent MassHunter .D files which skylines cannot importAllison Haase2021-12-07Brian Pratt2022-02-02
Decoys and the Targets perfectly overlap with each other -- Import DIA Peptide Searchnorelle wildburger2022-01-29Nick Shulman2022-02-01
An error occurred trying to download Skyline application?zhuma2022-01-31Nick Shulman2022-01-31
Problem inserting small molecule transition listSangram2022-01-27Brian Pratt2022-01-28
Show total ratio next to precursor masssarah joestl2022-01-28Nick Shulman2022-01-28
Transition signals integrate to 0jfoe2022-01-26jfoe2022-01-27
Diferentiate dda and dialuzjpaulo250412022-01-26Nick Shulman2022-01-26
How to set the same (matching) peak boundaries while integrating in SkylineMNezvedova2022-01-20MNezvedova2022-01-25
Unable to generate calibration curvesr yagoubi192022-01-22r yagoubi192022-01-23
Using Skyline image/logo in graphical abstract for publicationAlok2020-01-08roman sakson2022-01-22
Is it possible to get mProphet scores at the precursor level rather than the peptide level?brian246412022-01-22Nick Shulman2022-01-22
CE Optimization - Product Ion m/z is different in exported transition listPeter Jackson2022-01-21Peter Jackson2022-01-21
error message for the improdiletta piana2022-01-20Nick Shulman2022-01-21
Export reportgeorgios mermelekas2022-01-20georgios mermelekas2022-01-21
Help with bromide modificationsbianca dempsey2022-01-18Nick Shulman2022-01-19
Wishlist: Indicator for transitions that are diagnostic of PTMsdkueltz2022-01-02dkueltz2022-01-19
Selection of transitions that diminish precursor dotpdkueltz2022-01-14dkueltz2022-01-17
Theoretical peptide z-ion mass appears to be incorrectJHamey2018-11-14Brendan MacLean2022-01-17
mzTab Output from Skylinemhadisur2022-01-12mhadisur2022-01-15
SQL Failure Error with Peptide Libraryed32022-01-15ed32022-01-15
RT selection from multiple DDA file, matching highest dotP peptideaf12342022-01-12af12342022-01-14
Merging two documentsMichael Cundell2022-01-12Nick Shulman2022-01-13
Error skyline 21.2solene bertho2022-01-13solene bertho2022-01-13
Using IM predictor on DIA PASEFpaga2021-12-30Brian Pratt2022-01-12
File Loading Errorgermolus2021-10-17Nick Shulman2022-01-12
#N/A values for Normalised Area in Calibration curve gridsa8252022-01-10Nick Shulman2022-01-10
log4j issues?anders honore2022-01-07Brian Pratt2022-01-07
iRT peptides/protein as global standardJuan C. Rojas E.2022-01-06Juan C. Rojas E.2022-01-07
merging documents for library constructionWill Thompson2022-01-03Will Thompson2022-01-05
Flash player question for videosbconisko2022-01-02Nick Shulman2022-01-02
PTM scoringdkueltz2022-01-02dkueltz2022-01-02
Having an error when importing FragPipe DIA interact.pep.xml filesfcyu2021-12-31fcyu2021-12-31