error importing SPEC-lib file ( Import DIA Peptide search) | floor leurs | 2024-06-06 00:39 | |||||||||
When I select 'import DIA peptide search', I import a SPEC-LIB file that I created in DIANN. but then I get an error (it worked fine a few weeks ago). It also makes a text file (which was never formed before): skyline.redundant202406060903.stdin.txt The error says that the TSV report must be in the same directory (but it is...) Note: it does work in the 'normal' skyline (but not in skyline daily) Error: Skyline-daily (64-bit) 23.1.1.520 (80747de92) System.IO.IOException: ERROR: unable to determine DIA-NN report filename for 'library.TSV.speclib': the TSV report is required to read speclib files and must be in the same directory as the speclib and share some leading characters (e.g. somedata-tsv.speclib and somedata-report.tsv) Command-line: C:\skyline.redundant202406060925.stdin.txt" "C:\skyline.redundant.blib" Working directory: C:\---> System.IO.IOException: ERROR: unable to determine DIA-NN report filename for 'library.TSV.speclib': the TSV report is required to read speclib files and must be in the same directory as the speclib and share some leading characters (e.g. somedata-tsv.speclib and somedata-report.tsv) Command-line: C:\4NPBM2VL.RVQ\JNTWPZ9V.1HO\skyl..tion_9286511f3362df93_0017.0001_479d187256242aac\BlibBuild -s -A -H -v warn -o -c 0.95 -i skyline -S "C:\skyline.redundant202406060925.stdin.txt" "C:\skyline.redundant.blib" Working directory: C:\ Output: Reading results from library.TSV.speclib. ERROR: unable to determine DIA-NN report filename for 'library.TSV.speclib': the TSV report is required to read speclib files and must be in the same directory as the speclib and share some leading characters (e.g. somedata-tsv.speclib and somedata-report.tsv) 100% ---> System.IO.IOException: ERROR: unable to determine DIA-NN report filename for 'library.TSV.speclib': the TSV report is required to read speclib files and must be in the same directory as the speclib and share some leading characters (e.g. somedata-tsv.speclib and somedata-report.tsv) Command-line: C:\4NPBM2VL.RVQ\JNTWPZ9V.1HO\skyl..tion_9286511f3362df93_0017.0001_479d187256242aac\BlibBuild -s -A -H -v warn -o -c 0.95 -i skyline -S "C:\skyline.redundant202406060925.stdin.txt" "C:\skyline.redundant.blib" Working directory: C:\ at pwiz.Common.SystemUtil.ProcessRunner.Run(ProcessStartInfo psi, String stdin, IProgressMonitor progress, IProgressStatus& status, TextWriter writer, ProcessPriorityClass priorityClass, Boolean forceTempfilesCleanup, Func`3 outputAndExitCodeAreGoodFunc, Boolean updateProgressPercentage) in C:\proj\pwiz\pwiz_tools\Shared\CommonUtil\SystemUtil\ProcessRunner.cs:line 203 --- End of inner exception stack trace --- --- End of inner exception stack trace --- at pwiz.Common.SystemUtil.ProcessRunner.ThrowExceptionWithOutput(Exception exception, String output) in C:\proj\pwiz\pwiz_tools\Shared\CommonUtil\SystemUtil\ProcessRunner.cs:line 263 at pwiz.Common.SystemUtil.ProcessRunner.Run(ProcessStartInfo psi, String stdin, IProgressMonitor progress, IProgressStatus& status, TextWriter writer, ProcessPriorityClass priorityClass, Boolean forceTempfilesCleanup, Func`3 outputAndExitCodeAreGoodFunc, Boolean updateProgressPercentage) in C:\proj\pwiz\pwiz_tools\Shared\CommonUtil\SystemUtil\ProcessRunner.cs:line 245 at pwiz.BiblioSpec.BlibBuild.BuildLibrary(LibraryBuildAction libraryBuildAction, IProgressMonitor progressMonitor, IProgressStatus& status, String& commandArgs, String& messageLog, String[]& ambiguous) in C:\proj\pwiz\pwiz_tools\Shared\BiblioSpec\BlibBuild.cs:line 445 at pwiz.Skyline.Model.Lib.BiblioSpecLiteBuilder.BuildLibrary(IProgressMonitor progress) in C:\proj\pwiz\pwiz_tools\Skyline\Model\Lib\BiblioSpecLiteBuilder.cs:line 163 |
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