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CCS measured vs. CCS explicit (or library)tim causon2021-04-09Nick Shulman2021-04-09
Precursor Intensity from MS/MS spectrumbseale2021-04-09bseale2021-04-09
Building a spectral library using msplaura corveleyn2021-02-02Brian Pratt2021-04-08
Missing retention time when importing msp file to build SLlaura corveleyn2021-04-08Brian Pratt2021-04-08
Feature Request: Background Colorsjdevitt2021-04-07jdevitt2021-04-08
Error in Accuracy Calculation when Requiring Sample Dilution FactorWill Thompson2021-04-07Nick Shulman2021-04-07
Determine sequence coverage for proteinssimon jaag2021-03-23simon jaag2021-04-06
Question: How is the background calculated?hjl2021-04-06Nick Shulman2021-04-06
IMS FILTERrozas2021-03-31rozas2021-04-05
Build spectral library from MSfragger SpecLib workflowaf12342021-04-04Brendan MacLean2021-04-04
Retention times - SchedulingGao2021-04-02Brendan MacLean2021-04-02
FAIMS CV data analysisKeri2021-03-31Brian Pratt2021-04-02
fail to recognize spectral library from NIST8518136632020-10-13Brian Pratt2021-04-02
Error from importing Peptide Shaker mzidlauh22021-03-30lauh22021-04-01
LOOP PEPTIDEjmr2021-03-31jmr2021-04-01
The values of idopt and doptliudan2021-04-01Nick Shulman2021-04-01
No enzyme optionJason Held2012-02-25Brendan MacLean2021-03-30
DDA and PRM analysisdms732021-03-29Nick Shulman2021-03-29
Ion mobility value not displayed in Spectral Library Explorerisabel marquardt2021-03-24Brendan MacLean2021-03-26
y2 and b2 ions for quantificationnicolas pierre2021-03-26Brendan MacLean2021-03-26
Problem with precursor selection in MSconvertLiyan2021-03-25Nick Shulman2021-03-26
Collision Energy warnings when exporting a Bruker tims-ToF MS methodSusan Abbatiello2021-03-25Kaipo2021-03-26
Ion mobility librariesSusan Abbatiello2021-03-23Nick Shulman2021-03-25
Error: No matching modvalerie huhle2021-03-25Nick Shulman2021-03-25
any idea about the transitions of MFDCTNMPSPCHTKxinqun wu2021-03-25xinqun wu2021-03-25
Suggestion to Filtering Document Grid and Results Gridalejandro.cohen2021-03-25alejandro.cohen2021-03-25
Skyline not startingm kuppusamy2021-03-25Nick Shulman2021-03-25
IMS filtering on monoisotopic mass is not workingFelina H.2021-03-24Felina H.2021-03-25
CE optimization _transition list exportSandy_MRM2021-03-23Brendan MacLean2021-03-24
Retention Time shifts using deuterated internal standards.alejandro.cohen2021-03-23alejandro.cohen2021-03-24
Ion Mobility Library generation errorSusan Abbatiello2021-03-16Brian Pratt2021-03-23
Normalize area values?alejandro.cohen2021-03-19Nick Shulman2021-03-19
Using SIS-only calibration curve to quantify light or light/SIS ratiodavid schmidt2021-03-18Nick Shulman2021-03-18
water loss not shown for all peptidessophia foehr2021-03-18Nick Shulman2021-03-18
rdotp meaninghwang22017-04-26Nick Shulman2021-03-17
Transition list export for optimizing compensation voltage not limiting to transition limit set in export windowSusan Abbatiello2021-03-12Susan Abbatiello2021-03-16
Integrator Optionsjustyna zakaria2021-03-15Nick Shulman2021-03-15
unsupported score in MZidaf12342021-03-14matt.chambers42@gmail.com2021-03-15
tims method export clarificationSusan Abbatiello2021-03-12Susan Abbatiello2021-03-13
Select samples in results tableio2021-03-12Nick Shulman2021-03-12
AvG global refinement: missing temporary filewillems5332021-03-09Nick Shulman2021-03-09
Signal/Lärm für die Nachweisgrenzealexandria balac2021-02-26alexandria balac2021-03-09
Error in Turtorial DdaSearchMS1FilteringIrene_G2021-03-03Irene_G2021-03-08
Import Peptide Library from PEAKS Online from TIMS TOF dataed32020-10-09ed32021-03-04
Older Skyline versionsn-ochiai2021-03-03Brendan MacLean2021-03-03
Prosit unavalaiblelaure bastide2021-02-26laure bastide2021-03-03
Calibration curve - including information from replicatesKuba2021-03-02Nick Shulman2021-03-02
Lipodomics: How to apply single calibration curve (done with one representative molecule) to all members of a lipide class??StefanW2021-02-15Nick Shulman2021-03-02
Strange looking chromatogramsKuba2021-02-28Kuba2021-03-02
Parent-ion scanningr bagshaw2015-07-22Brian Pratt2021-03-01
Protein level FDR in Skyline?Chinmaya k2021-02-28Chinmaya k2021-02-28
How to create library (BiblioSpec spectral library), background Proteome (Background Proteome file:- human, yeast, BSA, and others).shelkarmicrobio235912021-02-25Nick Shulman2021-02-28
Collision Energy Optimization Thermo Fusion Lumosanne sanner2021-02-25Brendan MacLean2021-02-26
No chromatograms for transition ionsmichael-e-wright2021-02-26Nick Shulman2021-02-26
Enable Peptide settings / Digestion / Enzyme == None for top-downv delcourt2021-02-26v delcourt2021-02-26
settings for importing timsTOF files in Skylinekirti pandey2021-02-25kirti pandey2021-02-25
" don't know how to read "when uploading dia data in raw format10104199312021-02-2410104199312021-02-24
Can Skyline generate iRT assay library file used in Mobi-DIK script?Z. Jiang2021-02-24Brendan MacLean2021-02-24
How to use CIRT to predict retention time？caixue2020-05-20Brendan MacLean2021-02-24
Errors creating a spectral library and MS1 filteringmichael-e-wright2021-02-23Brendan MacLean2021-02-24
Generation of proteotypic peptideshogas aurel2021-02-24Brendan MacLean2021-02-24
Group Comparison with multiple parameterdavid hoi2021-02-24Nick Shulman2021-02-24
Import all peptides option using SkylineCmdjpaezpae2021-02-23Nick Shulman2021-02-23
Missing peaks MS1 quant centroid datamstokes2021-02-17Nick Shulman2021-02-23
SYFT Data supportChristina lucas2021-02-22Christina lucas2021-02-23
Problems saving mprophet featuresrmagni2021-02-19Brendan MacLean2021-02-22
Duplicate transitionshober2021-02-22Nick Shulman2021-02-22
All-ions fragmentation data workflowdmesasan2021-02-18Brian Pratt2021-02-19
Feature request: Monitoring [M-1] ion for small moleculesChris Ashwood2018-08-08roman sakson2021-02-19
Can I run without .NET 3.5?DWheatcraft2021-02-11matt.chambers42@gmail.com2021-02-17
Lipid Peak Integration Boundariesdpeake2021-02-17dpeake2021-02-17
Q-TOF .raw data search stops after certain retention timeYao Chen2019-08-13matt.chambers42@gmail.com2021-02-17
Problem with error model from mProphetSangram2021-02-16Sangram2021-02-16
Peak boundaries for small molecule shotgun lipidomicsbharat2017-07-19m j noga2021-02-16
Feature Request - Cycle TimeTobi2021-02-15Tobi2021-02-16
Unknown error when opening LC-IMS-MS chromatogramsrozas2021-01-28Brian Pratt2021-02-16
QuaSAR and SProCop and AVG-DIA Problemhatice akkulak2021-02-15Nick Shulman2021-02-15
Setting Transitions to Non-quantitative is not synchronized across light/heavy precursorsTobi2021-02-15Tobi2021-02-15
parse rules MS Amandakguehrs2021-01-05matt.chambers42@gmail.com2021-02-12
Error when importing .speclib spectral library from DIA-NNlevasseurmaxence2021-01-11matt.chambers42@gmail.com2021-02-12
Triple Dimethyl Modification not imported from MaxQuantSearchida suppanz2021-02-02matt.chambers42@gmail.com2021-02-12
small molecule integration filteringsufyan pandor2021-02-11Nick Shulman2021-02-11
Routine Absolute Quant Methodalaine garrett2021-02-11Brendan MacLean2021-02-11
Number format bugjrenders2021-02-10jrenders2021-02-11
A fixed and variable modification on the same amino acidlaura declerck2016-07-13matt.chambers42@gmail.com2021-02-11
Detection issuesluc camoin2021-02-05luc camoin2021-02-11
Detection Q Value shows #N/A for solid peptidesZ. Jiang2021-02-05Nick Shulman2021-02-05
Display of protein abundances in PRM experimentbpfister2021-02-05Nick Shulman2021-02-05
How to use explicit retention time in proteomics interface?yoneyamat2021-02-03yoneyamat2021-02-04
How to develop a MRM Method from scratch for known proteins (protocol/tutorial)AWY2021-02-03AWY2021-02-03
proteotypic peptidesio2021-02-03io2021-02-03
Simple precursor ratioschiva cristina2021-02-02chiva cristina2021-02-02
Exporting Skyline document as report to include modified amino acid position on proteinpaul.derbyshire@jic.ac.uk2021-01-29paul.derbyshire@jic.ac.uk2021-02-02
copy/paste error from excelWill Thompson2021-01-29Brendan MacLean2021-01-29
MS1 filteringpaul.derbyshire@jic.ac.uk2021-01-28paul.derbyshire@jic.ac.uk2021-01-29
Response of CE optimization (attached files)hjl2021-01-27Nick Shulman2021-01-28
chromatogram files disappearingChristian F2021-01-25Nick Shulman2021-01-28
FDR control for DIA dataZ. Jiang2021-01-13Brendan MacLean2021-01-27
CE optimizationhjl2021-01-20Brendan MacLean2021-01-27
MS1 Quant with t-SIM partially solved, still questions on skylineTobi2018-06-22Tobi2021-01-26