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Quantification of Cysteinylation of hinge-region peptides using NR PEP map data
babu ponnusamy30503
2025-02-07 03:18
Nick Shulman
2025-02-07 07:11
Full MS and t-SIM in the same RAW file: how can we download the full MS in Skyline?
lucille stuani
2025-02-06 11:58
Nick Shulman
2025-02-06 12:48
No replicate runs for PRM
akhilabrai
2025-02-05 03:44
akhilabrai
2025-02-05 21:59
DotP score calculation
YZ
2015-03-06 08:54
TY
2025-02-05 21:32
About the command Assigned to the protein with the most peptides and Removing subset proteins
takumi-honda
2025-02-05 18:03
takumi-honda
2025-02-05 18:03
Constructing Calibration Curves using Replicates
ejg29
2025-02-03 06:48
ejg29
2025-02-03 08:01
Reduce program window for SIM scan?
nicholas debono
2025-02-02 20:57
nicholas debono
2025-02-02 22:31
Number format when exporting
as
2025-02-02 08:35
as
2025-02-02 10:56
Avant Garde R Package Installation Failure
sgoulding
2023-10-05 14:05
simon daled
2025-01-31 05:01
Internal Standard for Small Molecules
laura gyger
2025-01-26 23:46
Nick Shulman
2025-01-31 00:42
Batch Effects
weitmanm
2025-01-28 15:57
Mike MacCoss
2025-01-30 13:27
MS1 XIC from Full-scan only (without MS2 (PRM/SRM) data)
TY
2025-01-17 01:41
TY
2025-01-29 20:26
protein number is different in volcano plot compared with the protein number in Skyline panel (Not all proteins were included in volcano plot)
kylinchang32
2025-01-27 15:53
kylinchang32
2025-01-28 07:24
MRM with known peptides
c frampas
2025-01-27 09:32
c frampas
2025-01-28 07:16
What is the typical mass accuracy for DDA data feature searching? 5 ppm for MS1 and 10 ppm for MS2?
liulin deng15048
2025-01-27 13:21
liulin deng15048
2025-01-27 13:21
creating spectral library for phosphopeptides using koina
afshari1
2025-01-27 09:50
afshari1
2025-01-27 09:50
cant create library from pepxml file from peaks
guo xue
2025-01-23 01:24
guo xue
2025-01-23 22:12
CE collision energy optimization for Thermo Stellar
skyfall
2025-01-14 08:45
Chris Ashwood
2025-01-23 14:50
signal to noise
jelliott11
2023-12-12 14:56
Nick Shulman
2025-01-21 15:50
Mass Accuracy and Batch Reanalysis
weitmanm
2025-01-15 05:48
Nick Shulman
2025-01-21 14:37
Absolute quantification database
mvm35
2025-01-21 02:36
mvm35
2025-01-21 02:36
Showing full Scan m/z by selecting collision energy step from elution profile with selected precursor under targets (not transition)
skyfall
2025-01-20 01:50
skyfall
2025-01-20 01:50
Problems with PRM negative mode data import
kth195
2025-01-17 20:00
kth195
2025-01-19 16:19
External Tool using Python >3.11
julianu
2025-01-17 02:22
dshteyn
2025-01-17 11:13
.pdResult File Import Issue
wes rogers
2024-06-14 14:12
wes rogers
2025-01-17 06:13
Internal standard, relative response factor and quantification
naymin saw
2022-12-20 09:06
mhenderson
2025-01-16 07:08
Import of raw files
akhilabrai
2025-01-15 02:25
akhilabrai
2025-01-15 02:25
Can I use spectronaut library(.txt) as skyline library for PRM test?
fengleink
2025-01-12 23:19
fengleink
2025-01-15 01:19
Glycopeptides
ceren kul
2025-01-14 10:29
Nick Shulman
2025-01-14 10:45
Exploris DIA - setting up isolation scheme in Skyline from file
caitriona scaife
2025-01-13 07:41
caitriona scaife
2025-01-14 10:36
Can I install skyline on Microsoft windows server edition
robert.rparker
2025-01-10 08:13
robert.rparker
2025-01-13 03:42
missing partial library and about precursor ions in MS1 filtering
rameshkr
2025-01-07 22:21
Nick Shulman
2025-01-12 08:00
How to convert .blib to .tsv
sofani7
2025-01-09 22:38
sofani7
2025-01-10 10:37
Error Loading .sky
moran598
2025-01-09 21:45
Nick Shulman
2025-01-10 02:56
Assistance with Importing Transition Lists into Skyline for Molecule Interface
anirudhkashyap511
2025-01-08 09:37
anirudhkashyap511
2025-01-09 07:01
Calibration curves/determining LOD from small molecule PRM data
poisson k
2025-01-08 14:41
poisson k
2025-01-08 14:41
Retention time filtering
chloe baldreki
2025-01-08 07:08
Nick Shulman
2025-01-08 13:06
Missing Ion Mobility Values
thomas poeschl
2025-01-03 04:28
Brian Pratt
2025-01-08 11:33
List ID formatting issue
edoud
2025-01-07 16:43
edoud
2025-01-08 04:59
Help with Small Molecule Library Building, etc.
mwmann
2024-09-10 10:19
Brian Pratt
2025-01-03 15:32
Tutorials for peptide sequence coverage
jinlai wei
2025-01-03 12:36
jinlai wei
2025-01-03 12:36
Skyline for MAC OS
ana normando
2020-03-17 10:50
xiangtongtongnb
2025-01-02 14:28
Assessing goodness of fit for quantitation
poisson k
2025-01-01 12:25
poisson k
2025-01-01 12:25
Adding metabolites to an analyzed batch and more
weitmanm
2024-12-30 09:37
Brian Pratt
2024-12-31 07:16
how to analyze prmPASEF data with skyline
guo xue
2024-12-26 23:23
Nick Shulman
2024-12-30 18:46
Skyline --remove (request)
anirudhkashyap511
2024-12-30 09:16
Brian Pratt
2024-12-30 09:57
Skyline - File -> Share -> Version
anirudhkashyap511
2024-12-26 09:59
anirudhkashyap511
2024-12-30 09:12
peptide uniqueness within a protein
skyfall
2024-12-19 06:01
Nick Shulman
2024-12-19 12:45
Skyline Isnt Opening
anirudhkashyap511
2024-12-19 10:18
Nick Shulman
2024-12-19 12:40
selecting x unique peptides per protein with priority to spectral library matches
skyfall
2024-12-19 06:21
bobxiong
2024-12-19 11:43
Absolute quantification calibration curve
mvm35
2024-12-19 03:58
mvm35
2024-12-19 09:08
Surrogate standard recovery calculation
dinusha mudalige
2024-12-17 21:11
Nick Shulman
2024-12-19 07:44
Multiple spectral libraries within the same Skyline doc
lincolnh
2024-12-05 10:51
Nick Shulman
2024-12-18 21:35
Failed Importing result
nr412
2019-05-28 06:45
Brian Pratt
2024-12-17 13:43
Automatic small molecule transition extraction from heavy + light neat runs
skyfall
2024-12-15 06:34
skyfall
2024-12-17 04:31
Issue in reading MS2 level data with mzML files converted from .raw files in MS convert
shanthini kannan
2024-12-12 14:16
shanthini kannan
2024-12-13 04:25
How to manually specify masses for which to extract chromatograms?
clindgren
2024-12-12 14:59
Nick Shulman
2024-12-12 22:40
unable to import mzml file into skyline
yaoyao wang
2024-12-12 18:34
yaoyao wang
2024-12-12 19:47
Issue in reading MS2 level data with mzML files converted from .raw files in MS convert
shanthini kannan
2024-12-12 14:01
shanthini kannan
2024-12-12 14:01
Using Koina for RT and optimal transition prediction for MRM assay development
vincentroyrichard
2024-12-11 09:23
Nick Shulman
2024-12-11 15:38
MSe settings for small molecules
adibattista
2024-12-10 11:52
adibattista
2024-12-10 14:26
An error occurred attempting to export. ERROR: Registry key (Software\Thermo Instruments\TNG\Stellar) not found. Stellar is not installed on this machine.
skyfall
2024-12-05 03:49
Rita Chupalov
2024-12-10 12:32
Chromatogram information unavailable
yaoyao wang
2024-12-04 18:15
Nick Shulman
2024-12-10 09:02
Wiff2 files of MS/MS data from SciexOS
jeroen kooistra
2024-12-06 01:30
jeroen kooistra
2024-12-10 03:57
Customs report - Peptides number per protein
tania karasiewicz
2024-12-09 02:12
Nick Shulman
2024-12-09 16:58
trouble shooting : adding a background proteome
ssedigh2
2024-12-09 13:45
Nick Shulman
2024-12-09 15:01
Modification filters
Zimeng
2024-11-26 23:40
Zimeng
2024-12-08 04:32
skyline full documentation file for Claude/ChatGPT/AI knowledge-base
skyfall
2024-12-02 02:06
skyfall
2024-12-04 02:48
How to calculate signal/noise ratio for LC peaks?
rangika gurunnanselage
2024-12-03 16:16
rangika gurunnanselage
2024-12-03 17:01
Skyline failed writing error when saving .sky files
monteb
2024-12-03 11:48
Brian Pratt
2024-12-03 11:56
Isotope Corrections
annikasilverberg
2024-12-03 09:23
Brian Pratt
2024-12-03 11:35
Untargeted lipidomics using Skyline
nidia lauzon2
2024-12-03 09:17
Brian Pratt
2024-12-03 11:30
Error in importing raw results due to modified .skyd file
hana selicova
2024-12-03 11:02
Brian Pratt
2024-12-03 11:25
SureQuant Method development
darora
2024-12-02 03:50
darora
2024-12-03 04:43
Bruker timsTOF HT ion mobility filtering resolving power
chloe baldreki
2024-11-28 08:17
Brian Pratt
2024-12-02 13:19
Import results from FRAGPIPE to create spectrl libraries
afshari1
2024-10-01 12:47
lxiiaanog
2024-12-01 23:21
GC MS Agilent import
daria makeeva
2024-11-25 07:48
Brian Pratt
2024-11-26 13:51
how to detect peaks with the same MRM transition
a van dam
2017-01-24 01:30
Brian Pratt
2024-11-26 11:52
MaxQuant error to build a library
melo-braga
2024-11-26 01:30
Nick Shulman
2024-11-26 07:28
Is it possible to optimise % HCD and % CID collision energies
alan atkins
2024-11-20 12:25
Nick Shulman
2024-11-25 23:19
No calibration curve
akhilabrai
2024-11-17 03:13
akhilabrai
2024-11-23 22:51
Peaks being Cut-Off on Skyline
achiu1
2024-11-22 13:27
Nick Shulman
2024-11-22 15:17
Peptide Uniqueness not being enforced
pliuni1
2024-11-21 09:23
Nick Shulman
2024-11-21 13:39
GPF_runs: No matches passed score filter in
vanyabangera
2024-11-19 21:52
vanyabangera
2024-11-20 23:33
Can different scan filters (e.g. HCD or CID) of the same precursor be separated?
alan atkins
2024-11-20 12:31
Nick Shulman
2024-11-20 12:59
Error when Merging Skyline Documents with Same Target lists, when using iRT molecules
Will Thompson
2024-11-19 14:12
Nick Shulman
2024-11-19 16:22
Issue, with skyline candidate peaks.
anirudhkashyap511
2024-11-19 10:28
Nick Shulman
2024-11-19 13:46
Waters Xevo G2 QTof raw file error
bruce37661
2024-11-17 18:17
Nick Shulman
2024-11-19 10:00
Using Surrogate internal standard
jihyunk
2024-10-31 14:14
Harrison Kim
2024-11-19 09:56
Set non-specific digestion for the Background proteome
lxiiaanog
2024-11-19 03:00
lxiiaanog
2024-11-19 03:00
Importing DIA-NN spectral libraries into Skyline
yuxing xue
2024-11-07 02:19
yuxing xue
2024-11-18 08:11
LOD and LOQ calculation
a das
2024-11-16 04:49
Nick Shulman
2024-11-16 08:43
initiator methionine peptide
dkueltz
2016-01-11 01:34
skyfall
2024-11-15 08:45
Creating & naming spectral libraries from ssl files via command line
Jonas Becker
2024-11-13 10:18
Nick Shulman
2024-11-13 13:45
Importing lists of peptides using SkylineRunner.exe / CMD
Jonas Becker
2024-09-09 08:25
Jonas Becker
2024-11-13 09:27
Assigning peak colors for small molescules
sarah williams
2020-08-06 15:50
Nick Shulman
2024-11-12 22:03
Analyte concentration to heavy
a das
2024-11-11 20:54
a das
2024-11-12 06:53
New DIA-PASEF method process with DIANN and export to skyline
JeromeVia
2024-10-14 06:05
JeromeVia
2024-11-12 01:17
Issue with the spectral library building
Anjana
2024-11-06 02:51
Nick Shulman
2024-11-08 09:10
Batch creation of SCIEX methods
kerteszv
2024-11-05 13:45
kerteszv
2024-11-06 08:19