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Creating spectral libraries from Proteome Discoverer result files
johannes voshol
2022-03-25
Nick Shulman
2023-03-24
ion mobility view does not work anymore
kristina marx
2023-03-24
Brendan MacLean
2023-03-24
Storing DP values (Declustering Potential) within Skyline
kathrin lauter4951
2016-02-23
Brendan MacLean
2023-03-22
ERROR: No spectra were found for the new library.
proteomica2
2023-03-13
proteomica2
2023-03-21
Recovery of Skyline "Import Results" process after system crash
tryphoncosinus
2023-03-21
Nick Shulman
2023-03-21
"Import DIA Peptide Search" pipeline in Skyline start page
tryphoncosinus
2023-03-15
Nick Shulman
2023-03-21
Trouble viewing MS2 data from Bruker maXis for systyem suitability applications
paul mathews
2023-03-08
paul mathews
2023-03-14
New BioReplicate column?
franziska vollmy
2023-03-14
Nick Shulman
2023-03-14
lack of weight 1/X calibration curve
giuseppe corona
2023-03-13
Nick Shulman
2023-03-13
Unintended behavior when performing CE optimization with more than 10 product ions for a precursor
Chris Ashwood
2023-03-10
Chris Ashwood
2023-03-10
building spectrum library issue
chen qian
2023-03-08
Nick Shulman
2023-03-09
Fail to integrate small molecule peaks
ho-tak lau
2023-02-22
Nick Shulman
2023-03-09
Fragpipe output parsing error
ho-tak lau
2023-03-08
Nick Shulman
2023-03-09
Peak integration wrong for a single replicate, but for thousands of precursors
joshuasmith
2023-03-07
Nick Shulman
2023-03-09
cannot see MS/MS data
naymin saw
2023-03-08
Brian Pratt
2023-03-08
Importing error "Index was outside the bounds of the array"
rschoenh@fhcrc.org
2017-08-29
rschoenh@fhcrc.org
2023-03-07
Issue with importing DIA-NN speclib
joshuasmith
2023-03-06
joshuasmith
2023-03-07
two accounts
cabarnescabarnes
2023-03-06
Vagisha Sharma
2023-03-06
Using previously calculated calibration curve equation
mshubham
2023-03-02
Nick Shulman
2023-03-03
Question of "Peak" Defination
hzhu
2023-03-02
hzhu
2023-03-02
PRM-PASEF method creation, 'All targets must have an ion mobility value'
robert parker
2023-03-01
Brian Pratt
2023-03-02
Query in DIA peak extraction and Groupwise comparison
Sangram
2023-02-28
Nick Shulman
2023-03-01
Mirror plot for modified vs unmodified peptides
lgamon
2023-03-01
lgamon
2023-03-01
Bibliospec not recognize modification from PLGS file
jcaceresvergara
2022-12-02
Nick Shulman
2023-02-28
Ion Mobility of Fragments are "0"
Premy
2023-02-26
Brian Pratt
2023-02-28
Build library from DDA and use the library in DIANN
lorrain
2023-02-27
Brian Pratt
2023-02-28
upgrade to skyline daily prevents opening data from Sciex 6500+
becker7825199
2023-02-24
Nick Shulman
2023-02-26
Skyline daily 22.2.1.391 closes upon import timsTOF DIAPASEF runs
an.staes@vib-ugent.be
2023-02-23
an.staes@vib-ugent.be
2023-02-26
Which product ion is used as Qualifier and Quantifier
johannes jaegers
2023-02-24
Nick Shulman
2023-02-25
skyline shows PROSIT library twice in the mirrored image ignoring real data
pavel shliaha
2023-02-22
pavel shliaha
2023-02-24
Switching synchronize integration on/off for specific target molecules of a multianalyte method
LeeM
2023-02-24
LeeM
2023-02-24
Defining Isolation Schemes for Bruker timsTOF DIA data
Premy
2023-01-13
Premy
2023-02-23
Sharing .skyd error
yann guitton
2023-02-23
yann guitton
2023-02-23
DIA-MS analysis: Replicates not showing up
nbaig
2023-02-20
Nick Shulman
2023-02-22
The system cannot find the file specified
sascha
2023-02-20
Brian Pratt
2023-02-22
SRM method creation for TSQ altis plus
kmsd
2023-02-22
Nick Shulman
2023-02-22
Analysis of hela-PRTC data from tsq altis plus
kmsd
2023-02-22
kmsd
2023-02-22
Skewness and kurtosis calculation
chloe cloteau
2023-02-21
chloe cloteau
2023-02-22
Retention times do not fit with scan times in ID picker
staab-weijnitz
2023-01-27
staab-weijnitz
2023-02-20
EICs replicate order distorted with the use of Ctrl + Shift + Up/Down (arrow key)
Juan C. Rojas E.
2023-02-14
Nick Shulman
2023-02-16
Peak annotation in Skyline
mnissa
2023-02-14
mnissa
2023-02-15
Request improved Precision on Retention Time Prediction Values
Will Thompson
2023-02-14
Nick Shulman
2023-02-14
Distorted peaks
VM26
2023-02-13
VM26
2023-02-14
Points Across Peak vs Raw Number of Points
anton poliakov
2023-02-14
Nick Shulman
2023-02-14
Error: no decoy PSMs were provided.
jalbin28068
2023-02-13
jalbin28068
2023-02-13
FATAL: An exception occurred: 'c' is not a valid amino acid
jalbin28068
2023-02-08
Matt Chambers
2023-02-10
Batch processing and command line
tryphoncosinus
2023-02-08
tryphoncosinus
2023-02-09
Skyline can't load the interact-*.pep.xml and *_uncalibrated.mgf files from FragPipe 19.1 coupled with MSFragger 3.7
fcyu
2023-01-18
fcyu
2023-02-09
Skyline compatibility with GC-QTOF
higgi022
2023-01-05
Brian Pratt
2023-02-08
No quantification data on isotopically labelled internal standard
wangn2
2023-02-06
wangn2
2023-02-07
Error SpectrumList_mzXML
CoB
2023-02-03
CoB
2023-02-07
In Targeted Method Refinement Tutorial I keep Getting a Corrupt RAW file error
sorenf
2023-02-01
sorenf
2023-02-06
Skyline integrates low signal peak but exports a zero value
halwaseem
2023-02-02
Nick Shulman
2023-02-02
Spectrum IDs
paul.derbyshire@tsl.ac.uk
2023-02-01
Nick Shulman
2023-02-02
DIA results from SCIEX 7600 zenoTOF instrument
lorrain
2023-02-02
lorrain
2023-02-02
Instructions for normalizing with TIC
dave lee-2
2023-02-02
Nick Shulman
2023-02-02
Fitting cross-linked peptides to an iRT scale
Juan C. Rojas E.
2023-01-16
Nick Shulman
2023-01-31
Showing Chromatogram information unavailable after importing results
mnissa
2023-01-30
Nick Shulman
2023-01-30
Exporting isolation list for Thermo Eclipse
mnissa
2023-01-30
mnissa
2023-01-30
Click to peak chromatographic peak broken?
Juan C. Rojas E.
2023-01-30
Brendan MacLean
2023-01-30
Not seen glycopeptides working with data from MSFRagger (DDA MS1 filtering)
cpavan
2023-01-18
cpavan
2023-01-27
Split retention time window
dennisjakob
2023-01-27
Nick Shulman
2023-01-27
Finding unique peptides
prajita
2023-01-23
prajita
2023-01-24
the problem of merging skyline documents with one raw data in different spectral libraries
zhao
2023-01-19
Nick Shulman
2023-01-22
Skyline not opening
henry
2023-01-19
Nick Shulman
2023-01-19
Raw CCS values and Overriding with Explicit IM Values
Premy
2023-01-05
Premy
2023-01-13
Windows 10 22H2 and Windows 11 22H2 Compatibility
taperez
2023-01-11
Nick Shulman
2023-01-11
Import FASTA file
prajita
2022-12-19
prajita
2023-01-10
Non-Canonical Amino Acid
lulmer
2022-10-24
Nick Shulman
2023-01-10
Skyline Batch error if decimal symbol is a comma
roman sakson
2023-01-06
roman sakson
2023-01-09
Selecting Prosit in Library Match window results in unexpected error
tmaile
2023-01-04
tmaile
2023-01-05
Issue in Spectral Library building from Timstof pro data (dda .d files)
suresh choudhary
2023-01-05
Nick Shulman
2023-01-05
Skyline for crosslinked peptides MSe Waters data analysis
floriana capuano28104
2023-01-05
Nick Shulman
2023-01-05
Opening DIA for small molecules ((bbCID (MS/MS) and MS)) from Bruker impact II
mohamed kaddah
2023-01-03
Nick Shulman
2023-01-03
Modifications for MSGF+ search within Skyline; chemical formulas don't seem to be accepted
kvancott2
2023-01-01
kvancott2
2023-01-01
Using R script in Skyline Batch
schen19
2021-08-27
roman sakson
2022-12-27
Calculation of asymmetry factor and tailing factor of chromatographic peaks
Juraj_Lenco
2019-08-06
roman sakson
2022-12-27
Feature request: color dotP labels based-on value
gabe
2020-04-06
Brendan MacLean
2022-12-26
Document Grid: Molecules missing Predicted Retention Time and/or Average Measured Retention Time when using a Spectral library
jtsorren
2022-12-13
Nick Shulman
2022-12-21
Internal standard, relative response factor and quantification
naymin saw
2022-12-20
Nick Shulman
2022-12-20
An error occurred trying to download Skyline
amahan
2022-12-19
Nick Shulman
2022-12-19
An error occurred trying to download 'https://skyline.gs.washington.edu/software/Skyline-release-64_4_2/Skyline.application'.
kguehrs
2019-01-22
amahan
2022-12-19
XIC overlay
sstoychev23513
2022-12-16
sstoychev23513
2022-12-16
AutoQC-no updating of raw files
danielacgranato
2022-12-16
Nick Shulman
2022-12-16
Generating GC-MS "transition list" from .msp
brynnsundberg
2022-12-14
Brian Pratt
2022-12-16
files with dual polarity
naymin saw
2022-12-09
Nick Shulman
2022-12-15
Keyboard Shortcuts
thomlau
2011-09-16
tg
2022-12-13
Spectronaut assay library import failed
Rita
2022-12-08
Rita
2022-12-13
Negative transitions (and precursor) of a peptide
dilip singh
2022-12-12
Brian Pratt
2022-12-12
DDA search hangs on "Running percolater..." with a specific FASTA file
Remco van Soest
2022-09-20
a kotronoulas
2022-12-08
Skyline on apple IOS
New to Skyline
2022-12-08
New to Skyline
2022-12-08
MGF files with product ion charges are ignored during spectral library build
jtsorren
2022-12-01
jtsorren
2022-12-07
Error message: Failure opening - "the file contains an error on line 13438 at column 9"
katherine wongtrakul-kish
2022-12-06
katherine wongtrakul-kish
2022-12-06
SureQuant with two FAIMS CV voltages on Orbitrap Fusion Lumos - ZigZag shaped peaks on Skyline
aheinone
2022-08-11
tej nishtala
2022-12-05
Waters Synapt G2-Si - multiple issues to access CCS values
nicolas macorps
2022-08-31
Brian Pratt
2022-12-05
Gas-phase-fractionation and iRT
Joerg
2022-11-18
Joerg
2022-12-05
New to SkyLine- In silico
New to Skyline
2022-11-29
New to Skyline
2022-12-05
Results found 2 samples instead of 34 samples from the msms file
yael hirschberg
2022-12-02
Nick Shulman
2022-12-02
timsTOF Scheduled PRM Data Import
robwsprung
2020-02-19
heather eastwood
2022-12-01
Prosit Server Unavailable with Skyline Latest Version
cm748
2022-12-01
Nick Shulman
2022-12-01