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Need help finding a tutorialsean davidson2019-02-21sean davidson2019-02-21
Add modifications to Skylinefrancescomattia mancuso2013-11-24Nick Shulman2019-02-21
An error occurred attempting to exportkpathak2019-02-19kpathak2019-02-21
Building and using the existing spectral libraries in skylineshobhabr202019-02-18shobhabr202019-02-21
Precursor intensitysmanda2019-02-18Nick Shulman2019-02-20
TMT-glycomics?jzaia2019-02-20Mike MacCoss2019-02-20
mProphet Modeling for MS1 XIC Analysisaaron robinson2018-09-17anatoly.urisman@ucsf.edu2019-02-19
Problems in "Peptide Setting→Library"Yan_LM2019-02-19Nick Shulman2019-02-19
Getting started, developing MRM's for the 1st time.neil dodsworth2019-02-19Brian Pratt2019-02-19
Full-scan settings not enabled-JCPrice2015-02-04Brendan MacLean2019-02-19
Unsupported score in search output file generated from Peptideshaker and several different search engine outputweixiandeng2019-02-11michael plank2019-02-18
DAT file to XML convertert j f m voermans2019-02-14Nick Shulman2019-02-16
does skyline use MS manufacturer's proprietary centroiding algorithm ?Antoine2018-03-21Nick Shulman2019-02-15
Exporting peak areas to compare multiple runslparsons2019-02-15Nick Shulman2019-02-15
Do we need to add the iRT standards to each fractions when building the library?zzhang92019-01-21Brendan MacLean2019-02-14
Protein Molecular Weightekuhn@broadinstitute.org2019-02-06Brendan MacLean2019-02-14
Problem in importing assay libraryankit1517.niper2019-02-07Brendan MacLean2019-02-14
DIA data upload and quantitative transitionsTomas Vaisar2019-02-14Tomas Vaisar2019-02-14
Multiplex PRM dataAndrea2019-02-11Tobi2019-02-14
Library build error (dat file)Jason Held2019-02-14Brendan MacLean2019-02-14
Skyline 4.2 upgrade issuezhangqing@scbit.org2019-02-13matt.chambers42@gmail.com2019-02-14
Custom Reporting -Small Moleculedavis2019-02-13davis2019-02-13
Accept peptide function could not match modified sequencesschen192019-02-13Brendan MacLean2019-02-13
short request non-quantitative transitionsTobi2019-02-08Tobi2019-02-13
Version differencessmanda2019-02-12smanda2019-02-12
Targeted MS/MS importing - cutting off ID'd peakskvancott22019-02-12kvancott22019-02-12
Tips for a long small molecule transition list?lparsons2019-02-11lparsons2019-02-11
Retention Time Window for Insert Transition Listlparsons2019-02-08Nick Shulman2019-02-09
jittery speak shape from SWATH data with overlapping windowsblattmann2019-02-07blattmann2019-02-08
Could not open the chromatogram file.Vineel2019-02-07Nick Shulman2019-02-07
Error Line 705 at column 9Kendra Adams2019-02-06Brian Pratt2019-02-07
Failed importing results filesandberg2019-01-22Brendan MacLean2019-02-07
Missing retention time when importing MSP filebart van puyvelde2019-02-04bart van puyvelde2019-02-07
Heavy labeled peptides (standard type in MSstats input)danielacgranato2019-01-31Nick Shulman2019-02-06
TMT11? (131H)jeffrey culver2019-02-06Brendan MacLean2019-02-06
Error while exporting methods on Thermo TSQ Altishober2019-02-06Brian Pratt2019-02-06
integrationFrederique van Holthoon2019-02-06Nick Shulman2019-02-06
How are "second best peaks" determined during mProphet modeling?a. schroeder2019-02-02a. schroeder2019-02-06
Report filezainab noor2018-11-15zainab noor2019-02-05
Phosphopeptides identified from MaxQuantwithout11022019-01-15lparsons2019-02-05
Error in standard curvemvillal12019-02-05mvillal12019-02-05
BlibBuild Commandsmanda2019-02-03Brian Pratt2019-02-04
Batch uploading Skyline files to PanoramaWebGao2019-02-01Gao2019-02-04
Import notes in skylineFabian2019-02-01Nick Shulman2019-02-01
Peak picking MS1-only datalparsons2019-01-31Brian Pratt2019-01-31
How to include CiRT peptidesankit1517.niper2019-01-30ankit1517.niper2019-01-30
NON stable isotope internal standards for absolute quantification.MP2018-04-29ana2019-01-29
Importing results of MS1-only data "raw full-scan settings must be enabled"lparsons2019-01-29lparsons2019-01-29
Offline installer trying the access internetCD2019-01-16CD2019-01-29
Skyline analysis of LTQ XL Targetted Metabolomicssawhelan2019-01-24Brian Pratt2019-01-28
Absolute concentration questionjung1652019-01-28Nick Shulman2019-01-28
MS1 extraction issue - varying imported results on 2 different computers/windows versionsthomas gossenreiter2019-01-22thomas gossenreiter2019-01-28
PRM FDR controljfoe2018-12-13jfoe2019-01-27
Differences between Skyline and ProteinPilot microapp Resultskosmatchev2019-01-25Brendan MacLean2019-01-27
Dotp vs Rdotp confusionjfoe2019-01-25Brendan MacLean2019-01-25
Lipidomics and MS1 filteringalejandro.cohen@dal.ca2019-01-17alejandro.cohen@dal.ca2019-01-25
Peptide/Protein intensitysbhosale2019-01-25sbhosale2019-01-25
Filtering Dominant Charge Statemeyermr@wustl.edu2015-11-25Tobi2019-01-24
Modifications XML Errormiguelramirez20202019-01-24miguelramirez20202019-01-24
Chromatograms from SIM scansmichael plank2019-01-13Tobi2019-01-24
Building library for searching MS1 data using Spectrum Millcarol_ball@agilent.com2019-01-22Brian Pratt2019-01-22
Major neutral loss peaks not extractedmichael plank2019-01-20michael plank2019-01-22
Incomplete MS1 XIC in case of additional ms/ms filteringFabian2018-05-08Nick Shulman2019-01-22
Quantitative measurement peptidem p j van hoorn2019-01-10m p j van hoorn2019-01-22
An error occurred trying to download 'https://skyline.gs.washington.edu/software/Skyline-release-64_4_2/Skyline.application'.kguehrs2019-01-22Brendan MacLean2019-01-22
CE optimize method XML parameter issue with Agilent 6495B qqqwangqingok@gmail.com2019-01-18wangqingok@gmail.com2019-01-18
Spectral library generationsmanda2019-01-16Nick Shulman2019-01-17
Redirect issue?llparker77652019-01-17Nick Shulman2019-01-17
custom modidficationedi goihberg2019-01-11Brian Pratt2019-01-17
Error with validation of installationllparker77652019-01-17Nick Shulman2019-01-17
SWATH IdentificationLehnert2019-01-10Lehnert2019-01-17
Crashed during a save and corrupted my fileAsger2019-01-15Asger2019-01-16
Error loading wiff filesRyan Hill2017-06-27becker782019-01-15
Building Library Issuestephanie zalesak2019-01-09stephanie zalesak2019-01-14
The document format version 4.2 is newer than the version 3.73 supported by Skyline (64-bit) .voellmy2018-11-12Nick Shulman2019-01-14
Spectral Library exportsstoychev2019-01-11Brendan MacLean2019-01-11
Support for mixed acquisition modesYishai2017-11-21Brendan MacLean2019-01-10
Unable to train peak scoring modelsmmidha2019-01-10Brendan MacLean2019-01-10
Building library issueVera2019-01-09Vera2019-01-09
Skyline Metabolomics Course/ Industry Consultancydavis2019-01-09Brendan MacLean2019-01-09
Strange decission by the "apply peak to all" function in one caseFabian2019-01-08Fabian2019-01-08
Multiple Peptide Area Histogramsdawn dufield2019-01-04dawn dufield2019-01-07
short question absolute peptide/protein quantification with internal heavy labeledTobi2019-01-03Tobi2019-01-06
providing a list of modified peptidespavels2019-01-03Brendan MacLean2019-01-03
quick reloading of data, upon changing peptide and transitionspavels2019-01-02pavels2019-01-03
mProphet missing decoys errordkueltz2019-01-02dkueltz2019-01-02
mzXML import error - Expected Sorted Data - Agilent Spectrum Millcarol_ball@agilent.com2019-01-02Brendan MacLean2019-01-02
Invalid Link for BlibBuild.exe, BlibFilter.exe and BlibToMs2.exe Downloadli zhiyu2019-01-02Brendan MacLean2019-01-02
Build spectral libraries using a large number of DDA filesbenoit fatou2018-12-04benoit fatou2019-01-02
Error building specra library from PD 2.2 filesleah03302019-01-01Brendan MacLean2019-01-01
Shimadzu QQQ methods with a large protein can not be predicted by skylinespklongz2018-12-31spklongz2018-12-31
pFind spectral libraryuser43802018-12-28sunrui2018-12-30
How to input the .sptxt filesunrui2018-12-30Brendan MacLean2018-12-30
Error when selecting "log2 fold change"in regulationsstoychev2018-12-28sstoychev2018-12-29
Importing out of memorylihaikuo2018-04-17Brendan MacLean2018-12-27
Overlapping MS1 dataTobi2018-10-30Tobi2018-12-26
Points Across PeakYasin2018-11-11Nick Shulman2018-12-24
Extracting precursor intensities from MS2 targeted scankentsisresearchgroup2018-12-20kentsisresearchgroup2018-12-21
Error while removing peaks and then apply to all functionssharma022018-11-06Nick Shulman2018-12-21
How to add RT and Analytes Name to Peak labelsdawn dufield2018-12-04Brendan MacLean2018-12-21