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Creating spectral libraries from Proteome Discoverer result filesjohannes voshol2022-03-25Nick Shulman2023-03-24
ion mobility view does not work anymorekristina marx2023-03-24Brendan MacLean2023-03-24
Storing DP values (Declustering Potential) within Skylinekathrin lauter49512016-02-23Brendan MacLean2023-03-22
ERROR: No spectra were found for the new library.proteomica22023-03-13proteomica22023-03-21
Recovery of Skyline "Import Results" process after system crashtryphoncosinus2023-03-21Nick Shulman2023-03-21
"Import DIA Peptide Search" pipeline in Skyline start pagetryphoncosinus2023-03-15Nick Shulman2023-03-21
Trouble viewing MS2 data from Bruker maXis for systyem suitability applicationspaul mathews2023-03-08paul mathews2023-03-14
New BioReplicate column?franziska vollmy2023-03-14Nick Shulman2023-03-14
lack of weight 1/X calibration curvegiuseppe corona2023-03-13Nick Shulman2023-03-13
Unintended behavior when performing CE optimization with more than 10 product ions for a precursorChris Ashwood2023-03-10Chris Ashwood2023-03-10
building spectrum library issuechen qian2023-03-08Nick Shulman2023-03-09
Fail to integrate small molecule peaksho-tak lau2023-02-22Nick Shulman2023-03-09
Fragpipe output parsing errorho-tak lau2023-03-08Nick Shulman2023-03-09
Peak integration wrong for a single replicate, but for thousands of precursorsjoshuasmith2023-03-07Nick Shulman2023-03-09
cannot see MS/MS datanaymin saw2023-03-08Brian Pratt2023-03-08
Importing error "Index was outside the bounds of the array"rschoenh@fhcrc.org2017-08-29rschoenh@fhcrc.org2023-03-07
Issue with importing DIA-NN speclibjoshuasmith2023-03-06joshuasmith2023-03-07
two accountscabarnescabarnes2023-03-06Vagisha Sharma2023-03-06
Using previously calculated calibration curve equationmshubham2023-03-02Nick Shulman2023-03-03
Question of "Peak" Definationhzhu2023-03-02hzhu2023-03-02
PRM-PASEF method creation, 'All targets must have an ion mobility value'robert parker2023-03-01Brian Pratt2023-03-02
Query in DIA peak extraction and Groupwise comparisonSangram2023-02-28Nick Shulman2023-03-01
Mirror plot for modified vs unmodified peptideslgamon2023-03-01lgamon2023-03-01
Bibliospec not recognize modification from PLGS filejcaceresvergara2022-12-02Nick Shulman2023-02-28
Ion Mobility of Fragments are "0"Premy2023-02-26Brian Pratt2023-02-28
Build library from DDA and use the library in DIANNlorrain2023-02-27Brian Pratt2023-02-28
upgrade to skyline daily prevents opening data from Sciex 6500+becker78251992023-02-24Nick Shulman2023-02-26
Skyline daily 22.2.1.391 closes upon import timsTOF DIAPASEF runsan.staes@vib-ugent.be2023-02-23an.staes@vib-ugent.be2023-02-26
Which product ion is used as Qualifier and Quantifierjohannes jaegers2023-02-24Nick Shulman2023-02-25
skyline shows PROSIT library twice in the mirrored image ignoring real datapavel shliaha2023-02-22pavel shliaha2023-02-24
Switching synchronize integration on/off for specific target molecules of a multianalyte methodLeeM2023-02-24LeeM2023-02-24
Defining Isolation Schemes for Bruker timsTOF DIA dataPremy2023-01-13Premy2023-02-23
Sharing .skyd erroryann guitton2023-02-23yann guitton2023-02-23
DIA-MS analysis: Replicates not showing upnbaig2023-02-20Nick Shulman2023-02-22
The system cannot find the file specifiedsascha2023-02-20Brian Pratt2023-02-22
SRM method creation for TSQ altis pluskmsd2023-02-22Nick Shulman2023-02-22
Analysis of hela-PRTC data from tsq altis pluskmsd2023-02-22kmsd2023-02-22
Skewness and kurtosis calculationchloe cloteau2023-02-21chloe cloteau2023-02-22
Retention times do not fit with scan times in ID pickerstaab-weijnitz2023-01-27staab-weijnitz2023-02-20
EICs replicate order distorted with the use of Ctrl + Shift + Up/Down (arrow key)Juan C. Rojas E.2023-02-14Nick Shulman2023-02-16
Peak annotation in Skylinemnissa2023-02-14mnissa2023-02-15
Request improved Precision on Retention Time Prediction ValuesWill Thompson2023-02-14Nick Shulman2023-02-14
Distorted peaksVM262023-02-13VM262023-02-14
Points Across Peak vs Raw Number of Pointsanton poliakov2023-02-14Nick Shulman2023-02-14
Error: no decoy PSMs were provided.jalbin280682023-02-13jalbin280682023-02-13
FATAL: An exception occurred: 'c' is not a valid amino acidjalbin280682023-02-08Matt Chambers2023-02-10
Batch processing and command linetryphoncosinus2023-02-08tryphoncosinus2023-02-09
Skyline can't load the interact-*.pep.xml and *_uncalibrated.mgf files from FragPipe 19.1 coupled with MSFragger 3.7fcyu2023-01-18fcyu2023-02-09
Skyline compatibility with GC-QTOFhiggi0222023-01-05Brian Pratt2023-02-08
No quantification data on isotopically labelled internal standardwangn22023-02-06wangn22023-02-07
Error SpectrumList_mzXMLCoB2023-02-03CoB2023-02-07
In Targeted Method Refinement Tutorial I keep Getting a Corrupt RAW file errorsorenf2023-02-01sorenf2023-02-06
Skyline integrates low signal peak but exports a zero valuehalwaseem2023-02-02Nick Shulman2023-02-02
Spectrum IDspaul.derbyshire@tsl.ac.uk2023-02-01Nick Shulman2023-02-02
DIA results from SCIEX 7600 zenoTOF instrumentlorrain2023-02-02lorrain2023-02-02
Instructions for normalizing with TICdave lee-22023-02-02Nick Shulman2023-02-02
Fitting cross-linked peptides to an iRT scaleJuan C. Rojas E.2023-01-16Nick Shulman2023-01-31
Showing Chromatogram information unavailable after importing resultsmnissa2023-01-30Nick Shulman2023-01-30
Exporting isolation list for Thermo Eclipsemnissa2023-01-30mnissa2023-01-30
Click to peak chromatographic peak broken?Juan C. Rojas E.2023-01-30Brendan MacLean2023-01-30
Not seen glycopeptides working with data from MSFRagger (DDA MS1 filtering)cpavan2023-01-18cpavan2023-01-27
Split retention time windowdennisjakob2023-01-27Nick Shulman2023-01-27
Finding unique peptidesprajita2023-01-23prajita2023-01-24
the problem of merging skyline documents with one raw data in different spectral librarieszhao2023-01-19Nick Shulman2023-01-22
Skyline not openinghenry2023-01-19Nick Shulman2023-01-19
Raw CCS values and Overriding with Explicit IM ValuesPremy2023-01-05Premy2023-01-13
Windows 10 22H2 and Windows 11 22H2 Compatibilitytaperez2023-01-11Nick Shulman2023-01-11
Import FASTA fileprajita2022-12-19prajita2023-01-10
Non-Canonical Amino Acidlulmer2022-10-24Nick Shulman2023-01-10
Skyline Batch error if decimal symbol is a commaroman sakson2023-01-06roman sakson2023-01-09
Selecting Prosit in Library Match window results in unexpected errortmaile2023-01-04tmaile2023-01-05
Issue in Spectral Library building from Timstof pro data (dda .d files)suresh choudhary2023-01-05Nick Shulman2023-01-05
Skyline for crosslinked peptides MSe Waters data analysisfloriana capuano281042023-01-05Nick Shulman2023-01-05
Opening DIA for small molecules ((bbCID (MS/MS) and MS)) from Bruker impact IImohamed kaddah2023-01-03Nick Shulman2023-01-03
Modifications for MSGF+ search within Skyline; chemical formulas don't seem to be acceptedkvancott22023-01-01kvancott22023-01-01
Using R script in Skyline Batchschen192021-08-27roman sakson2022-12-27
Calculation of asymmetry factor and tailing factor of chromatographic peaksJuraj_Lenco2019-08-06roman sakson2022-12-27
Feature request: color dotP labels based-on valuegabe2020-04-06Brendan MacLean2022-12-26
Document Grid: Molecules missing Predicted Retention Time and/or Average Measured Retention Time when using a Spectral libraryjtsorren2022-12-13Nick Shulman2022-12-21
Internal standard, relative response factor and quantificationnaymin saw2022-12-20Nick Shulman2022-12-20
An error occurred trying to download Skylineamahan2022-12-19Nick Shulman2022-12-19
An error occurred trying to download 'https://skyline.gs.washington.edu/software/Skyline-release-64_4_2/Skyline.application'.kguehrs2019-01-22amahan2022-12-19
XIC overlaysstoychev235132022-12-16sstoychev235132022-12-16
AutoQC-no updating of raw filesdanielacgranato2022-12-16Nick Shulman2022-12-16
Generating GC-MS "transition list" from .mspbrynnsundberg2022-12-14Brian Pratt2022-12-16
files with dual polaritynaymin saw2022-12-09Nick Shulman2022-12-15
Keyboard Shortcutsthomlau2011-09-16tg2022-12-13
Spectronaut assay library import failedRita2022-12-08Rita2022-12-13
Negative transitions (and precursor) of a peptidedilip singh2022-12-12Brian Pratt2022-12-12
DDA search hangs on "Running percolater..." with a specific FASTA fileRemco van Soest2022-09-20a kotronoulas2022-12-08
Skyline on apple IOSNew to Skyline2022-12-08New to Skyline2022-12-08
MGF files with product ion charges are ignored during spectral library buildjtsorren2022-12-01jtsorren2022-12-07
Error message: Failure opening - "the file contains an error on line 13438 at column 9"katherine wongtrakul-kish2022-12-06katherine wongtrakul-kish2022-12-06
SureQuant with two FAIMS CV voltages on Orbitrap Fusion Lumos - ZigZag shaped peaks on Skylineaheinone2022-08-11tej nishtala2022-12-05
Waters Synapt G2-Si - multiple issues to access CCS valuesnicolas macorps2022-08-31Brian Pratt2022-12-05
Gas-phase-fractionation and iRTJoerg2022-11-18Joerg2022-12-05
New to SkyLine- In silicoNew to Skyline2022-11-29New to Skyline2022-12-05
Results found 2 samples instead of 34 samples from the msms fileyael hirschberg2022-12-02Nick Shulman2022-12-02
timsTOF Scheduled PRM Data Importrobwsprung2020-02-19heather eastwood2022-12-01
Prosit Server Unavailable with Skyline Latest Versioncm7482022-12-01Nick Shulman2022-12-01