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5MRM not shown at the same timexin huang2021-01-20xin huang2021-01-21
CE optimizationhjl2021-01-20hjl2021-01-20
Installing/enabling external tool in Administrator install of Skylinem j noga2021-01-14Nick Shulman2021-01-20
Optimal analysis workflow for 500 sample DIA experiment?becky carlyle2021-01-19Tobi2021-01-19
Libraries and targeted analysisBabak2021-01-19Nick Shulman2021-01-19
Error importing Percolator v3.05 xmldamon barbacci220982021-01-19matt.chambers42@gmail.com2021-01-19
paired comparison in Skylinezdarula2021-01-15zdarula2021-01-19
Small molecule (non-global) standard concentrationsjrenders2020-09-01Nick Shulman2021-01-15
DIA analysis; unable to remove precursorsnarjis fatima2020-12-25Brendan MacLean2021-01-15
FDR control for DIA dataZ. Jiang2021-01-13Z. Jiang2021-01-14
Error when importing .speclib spectral library from DIA-NNlevasseurmaxence2021-01-11matt.chambers42@gmail.com2021-01-14
parse rules MS Amandakguehrs2021-01-05matt.chambers42@gmail.com2021-01-14
Peak Scoring with heavy peptidestilman werner2021-01-08Brendan MacLean2021-01-13
Protein abundance issuefrancescodemetrio lofaro2021-01-13Nick Shulman2021-01-13
Importing results does not show peaks (which I know are there)barryh2021-01-12barryh2021-01-12
Modifying Molecule Name in Target Listdavis2021-01-12Nick Shulman2021-01-12
PRM-quantitate with precursor or fragment?sallym82021-01-10Nick Shulman2021-01-10
Different results from raw data that are nearly the same in MassLynxanna walke2021-01-07Nick Shulman2021-01-07
Not able to install Skyline software on my computer (Windows 7)jeon2021-01-07jeon2021-01-07
Analysis Strategyklemens froehlich2021-01-05Brendan MacLean2021-01-06
iRT on non linear gradientbenoit fatou2021-01-04benoit fatou2021-01-04
Grey dotted lines?henrik molina2020-12-16henrik molina2020-12-23
modifications.xmlziyang zhang2020-12-22ziyang zhang2020-12-22
transition detection issuesclemence balty2020-12-17Nick Shulman2020-12-18
Must have MS1 scans in PRM methods?ziyang zhang2020-12-16ziyang zhang2020-12-17
Target non-monoisotopic ionZac2020-12-17Nick Shulman2020-12-17
Cannot load Daily installation file onto any pc's that do not already have it installedjgb22020-12-16Nick Shulman2020-12-16
Peptide Atlas Download for human library builddaraghob2020-12-16Nick Shulman2020-12-16
A fixed and variable modification on the same amino acidlaura declerck2016-07-13matt.chambers42@gmail.com2020-12-14
Issue With Retention Time Selectioned32020-12-11Nick Shulman2020-12-11
Error when importing iproph.pep.xmlztflaten2020-12-07Nick Shulman2020-12-07
"resolving protein details" problem AND lost library problem upon install of newer Skyline versioncabarnescabarnes2020-12-05Brian Pratt2020-12-07
Trouble reading wiff files. Does not contain SRM/MRM chromatograms.stephan kamrad2020-12-05stephan kamrad2020-12-05
Is there any availiable tool for export skyline results and deal with the results?166220808272020-12-02Nick Shulman2020-12-02
Hide from ViewJan Sklenar2020-06-09Jan Sklenar2020-12-02
MS1 filtering mode for lipidsEric Merkley2020-12-01Brendan MacLean2020-12-01
Issue with Skyline transition list exportShalini Aggarwal2020-10-27Brendan MacLean2020-12-01
Specifying Integration Boundariesjrenders2020-11-09Brian Pratt2020-11-30
Sequential protein extraction analysisfrancescodemetrio lofaro2020-11-30Nick Shulman2020-11-30
Adding peptides manually in spectral librarymdshadman abid2020-11-30Nick Shulman2020-11-30
CE optimization on Agilent QQQSarah Michaud2017-11-06Brendan MacLean2020-11-27
NIST library with Unimod, but untypical modificationssolis2020-11-26solis2020-11-27
Incorrect modification (TMT) mass detected in the spectrum fileab2020-11-25Nick Shulman2020-11-25
Quantifying with surrogate standardsJoerg2020-11-24Nick Shulman2020-11-24
Chromatogram information unavailable after importing mzML filesAndreas2020-11-24Nick Shulman2020-11-24
ppm-level calculationlaura nieder2020-11-23laura nieder2020-11-23
Trouble finding spectrum files - can they be input through a command line interfacejharrison2020-11-23jharrison2020-11-23
Annotation of Light peptide fragments instead of heavy fragmentsnyalwijo2020-11-22Nick Shulman2020-11-23
Precursor Report: Duplicate lines?alejandro.cohen2020-11-19alejandro.cohen2020-11-20
Question about iRT prediction in skyline166220808272020-11-15Brendan MacLean2020-11-18
Small molecule: calibration curves for individual targetsalejandro.cohen2020-11-18alejandro.cohen2020-11-18
Train Drift Time predictor - "Skyline Drift Time Predictor Training" tutorials18998122020-11-09s18998122020-11-18
MPPARRReport tool not workingroman koziy2020-11-16roman koziy2020-11-17
Skyline external tool using SkylineTool not able to import small molecule blib from directory using AddSpectralLibrary commandChris Ashwood2020-11-13Chris Ashwood2020-11-16
peptides with mixtures of modified and unmodified residuesKeri2018-05-09Keri2020-11-15
Variable MRM time windowsbenoit fatou2020-11-13Brian Pratt2020-11-13
Silicone isotope pattern: is it possible to add it?marcel reimann2020-11-13Brian Pratt2020-11-13
MS1-Filtering small molecules: Threshold - "empty samples"marcel reimann2020-11-13Nick Shulman2020-11-13
spectral library from Peaks Online pepXMLTharan Srikumar2020-11-11Tharan Srikumar2020-11-12
typing sequence namegabriele philipps2020-11-09gabriele philipps2020-11-10
Set Pause Time and Dwell Timebenoit fatou2020-10-27Kaipo2020-11-10
peptide prediction tool (stability and signal strength)gabriele philipps2020-11-09Nick Shulman2020-11-09
predict peptide from the first aminospklongz2020-11-09Nick Shulman2020-11-09
Spectral Library Creationpg232020-11-06Brian Pratt2020-11-06
Error 0x800F0954 when installing Skylinealvaro sanchez2020-11-06Nick Shulman2020-11-06
Drif time predictormariangela valletta2020-10-30Brian Pratt2020-11-05
Why Can't Peptide Search Be Imported Without Full-scan MS1 Filtering?philip remes2020-11-03Kaipo2020-11-04
Need Skyline 20.1.0.31 32bit (f09d9bed5)wnc42020-11-04Brendan MacLean2020-11-04
Error on Importing after installing a UV/VIS detectorchris brown-22020-11-02matt.chambers42@gmail.com2020-11-02
Import Library Assay for small molecules process?alejandro.cohen2020-10-29alejandro.cohen2020-10-29
Calibration curve data exportZac2020-10-28Zac2020-10-28
wiff2 file from Sciex Echo MS fails to import to skylinemichelle robinson2020-10-26michelle robinson2020-10-28
Peaks of light and heavy peptides have unequal peak boundariesfcsigloch2020-10-22Nick Shulman2020-10-26
MRM triggered MSMSheyang2020-02-04heyang2020-10-26
Precursors per sample injection thinks it is transitions per sample injectionphilip remes2020-04-04Nick Shulman2020-10-24
MS1 filtering: is manual XIC window mass tolerances possible?alejandro.cohen2020-10-23alejandro.cohen2020-10-23
Import Peptide Library from PEAKS Online from TIMS TOF dataed32020-10-09ed32020-10-23
Problem library creation for cross-linkingtatianibl2020-10-22Nick Shulman2020-10-22
Confusion with Skyline and Proteome DiscovererMark Athanason2020-10-20Brendan MacLean2020-10-21
Some peptides show incomplete peaks but in raw data they are okayyingzhu19922020-10-05sponce12020-10-20
HMDB-msp file import problemJoerg2020-10-14Joerg2020-10-20
Storage location for custom PTMsdkueltz2020-10-07Brendan MacLean2020-10-19
installation problemniyatti2020-10-17Nick Shulman2020-10-18
Problem building spectral libraryitv0052020-10-15Brendan MacLean2020-10-16
Problems with import of peak boundaries in smallmolecule mode for .wiff dataMax2020-08-24Nick Shulman2020-10-15
Skyline using questionschaoxue2020-10-05Brian Pratt2020-10-15
Reduction in the number of true peptide identification as the number of DIA raw files increases in the spectral library searchChinmaya k2020-09-28Nick Shulman2020-10-15
Identifying a significant protein in Skyline but it's not found in raw files.renad almahdali2020-10-15Nick Shulman2020-10-15
Unable to retrieve application files. Files corrupt in deployment. Skyline-64_20_2_0_286 unplugged versionh a ebhardt2020-10-15Nick Shulman2020-10-15
fail to recognize spectral library from NIST8518136632020-10-138518136632020-10-14
manual selection and change of ion mobility range for prm-PASEFRBl2020-10-14Brendan MacLean2020-10-14
Transition settings ion mobility "use spectral library mobility values when present" cannot be uncheckedpierre-olivier schmit2020-10-14Brian Pratt2020-10-14
ERROR: No Spectra were found for the new librarylake n paul2020-10-13matt.chambers42@gmail.com2020-10-14
Skyline CMD helpsmanda2020-08-13Kaipo2020-10-14
Some bugs shown in softwarefenglinshen yzu2020-10-13Nick Shulman2020-10-14
Unable to see any fragment ions in Skylineclgunth22020-10-13clgunth22020-10-13
Skyline 20.2 refuses to installTomas Vaisar2020-10-13Tomas Vaisar2020-10-13
MS Amanda search result files?dkueltz2020-10-12matt.chambers42@gmail.com2020-10-13
Customise reportsgiulia lambiase2020-10-09Brendan MacLean2020-10-12
Question New Protein Abundance Report Featureroman sakson2020-10-12roman sakson2020-10-12