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Quantification of Cysteinylation of hinge-region peptides using NR PEP map datababu ponnusamy305032025-02-07 03:18Nick Shulman2025-02-07 07:11
Full MS and t-SIM in the same RAW file: how can we download the full MS in Skyline?lucille stuani2025-02-06 11:58Nick Shulman2025-02-06 12:48
No replicate runs for PRMakhilabrai2025-02-05 03:44akhilabrai2025-02-05 21:59
DotP score calculationYZ2015-03-06 08:54TY2025-02-05 21:32
About the command Assigned to the protein with the most peptides and Removing subset proteinstakumi-honda2025-02-05 18:03takumi-honda2025-02-05 18:03
Constructing Calibration Curves using Replicatesejg292025-02-03 06:48ejg292025-02-03 08:01
Reduce program window for SIM scan?nicholas debono2025-02-02 20:57nicholas debono2025-02-02 22:31
Number format when exportingas2025-02-02 08:35as2025-02-02 10:56
Avant Garde R Package Installation Failuresgoulding2023-10-05 14:05simon daled2025-01-31 05:01
Internal Standard for Small Moleculeslaura gyger2025-01-26 23:46Nick Shulman2025-01-31 00:42
Batch Effectsweitmanm2025-01-28 15:57Mike MacCoss2025-01-30 13:27
MS1 XIC from Full-scan only (without MS2 (PRM/SRM) data)TY2025-01-17 01:41TY2025-01-29 20:26
protein number is different in volcano plot compared with the protein number in Skyline panel (Not all proteins were included in volcano plot)kylinchang322025-01-27 15:53kylinchang322025-01-28 07:24
MRM with known peptidesc frampas2025-01-27 09:32c frampas2025-01-28 07:16
What is the typical mass accuracy for DDA data feature searching? 5 ppm for MS1 and 10 ppm for MS2?liulin deng150482025-01-27 13:21liulin deng150482025-01-27 13:21
creating spectral library for phosphopeptides using koinaafshari12025-01-27 09:50afshari12025-01-27 09:50
cant create library from pepxml file from peaksguo xue2025-01-23 01:24guo xue2025-01-23 22:12
CE collision energy optimization for Thermo Stellarskyfall2025-01-14 08:45Chris Ashwood2025-01-23 14:50
signal to noisejelliott112023-12-12 14:56Nick Shulman2025-01-21 15:50
Mass Accuracy and Batch Reanalysisweitmanm2025-01-15 05:48Nick Shulman2025-01-21 14:37
Absolute quantification databasemvm352025-01-21 02:36mvm352025-01-21 02:36
Showing full Scan m/z by selecting collision energy step from elution profile with selected precursor under targets (not transition)skyfall2025-01-20 01:50skyfall2025-01-20 01:50
Problems with PRM negative mode data importkth1952025-01-17 20:00kth1952025-01-19 16:19
External Tool using Python >3.11julianu2025-01-17 02:22dshteyn2025-01-17 11:13
.pdResult File Import Issuewes rogers2024-06-14 14:12wes rogers2025-01-17 06:13
Internal standard, relative response factor and quantificationnaymin saw2022-12-20 09:06mhenderson2025-01-16 07:08
Import of raw filesakhilabrai2025-01-15 02:25akhilabrai2025-01-15 02:25
Can I use spectronaut library(.txt) as skyline library for PRM test?fengleink2025-01-12 23:19fengleink2025-01-15 01:19
Glycopeptidesceren kul2025-01-14 10:29Nick Shulman2025-01-14 10:45
Exploris DIA - setting up isolation scheme in Skyline from filecaitriona scaife2025-01-13 07:41caitriona scaife2025-01-14 10:36
Can I install skyline on Microsoft windows server editionrobert.rparker2025-01-10 08:13robert.rparker2025-01-13 03:42
missing partial library and about precursor ions in MS1 filteringrameshkr2025-01-07 22:21Nick Shulman2025-01-12 08:00
How to convert .blib to .tsvsofani72025-01-09 22:38sofani72025-01-10 10:37
Error Loading .skymoran5982025-01-09 21:45Nick Shulman2025-01-10 02:56
Assistance with Importing Transition Lists into Skyline for Molecule Interfaceanirudhkashyap5112025-01-08 09:37anirudhkashyap5112025-01-09 07:01
Calibration curves/determining LOD from small molecule PRM datapoisson k2025-01-08 14:41poisson k2025-01-08 14:41
Retention time filteringchloe baldreki2025-01-08 07:08Nick Shulman2025-01-08 13:06
Missing Ion Mobility Valuesthomas poeschl2025-01-03 04:28Brian Pratt2025-01-08 11:33
List ID formatting issueedoud2025-01-07 16:43edoud2025-01-08 04:59
Help with Small Molecule Library Building, etc.mwmann2024-09-10 10:19Brian Pratt2025-01-03 15:32
Tutorials for peptide sequence coveragejinlai wei2025-01-03 12:36jinlai wei2025-01-03 12:36
Skyline for MAC OSana normando2020-03-17 10:50xiangtongtongnb2025-01-02 14:28
Assessing goodness of fit for quantitationpoisson k2025-01-01 12:25poisson k2025-01-01 12:25
Adding metabolites to an analyzed batch and moreweitmanm2024-12-30 09:37Brian Pratt2024-12-31 07:16
how to analyze prmPASEF data with skylineguo xue2024-12-26 23:23Nick Shulman2024-12-30 18:46
Skyline --remove (request)anirudhkashyap5112024-12-30 09:16Brian Pratt2024-12-30 09:57
Skyline - File -> Share -> Versionanirudhkashyap5112024-12-26 09:59anirudhkashyap5112024-12-30 09:12
peptide uniqueness within a proteinskyfall2024-12-19 06:01Nick Shulman2024-12-19 12:45
Skyline Isnt Openinganirudhkashyap5112024-12-19 10:18Nick Shulman2024-12-19 12:40
selecting x unique peptides per protein with priority to spectral library matchesskyfall2024-12-19 06:21bobxiong2024-12-19 11:43
Absolute quantification calibration curvemvm352024-12-19 03:58mvm352024-12-19 09:08
Surrogate standard recovery calculationdinusha mudalige2024-12-17 21:11Nick Shulman2024-12-19 07:44
Multiple spectral libraries within the same Skyline doclincolnh2024-12-05 10:51Nick Shulman2024-12-18 21:35
Failed Importing resultnr4122019-05-28 06:45Brian Pratt2024-12-17 13:43
Automatic small molecule transition extraction from heavy + light neat runsskyfall2024-12-15 06:34skyfall2024-12-17 04:31
Issue in reading MS2 level data with mzML files converted from .raw files in MS convertshanthini kannan2024-12-12 14:16shanthini kannan2024-12-13 04:25
How to manually specify masses for which to extract chromatograms?clindgren2024-12-12 14:59Nick Shulman2024-12-12 22:40
unable to import mzml file into skylineyaoyao wang2024-12-12 18:34yaoyao wang2024-12-12 19:47
Issue in reading MS2 level data with mzML files converted from .raw files in MS convertshanthini kannan2024-12-12 14:01shanthini kannan2024-12-12 14:01
Using Koina for RT and optimal transition prediction for MRM assay developmentvincentroyrichard2024-12-11 09:23Nick Shulman2024-12-11 15:38
MSe settings for small moleculesadibattista2024-12-10 11:52adibattista2024-12-10 14:26
An error occurred attempting to export. ERROR: Registry key (Software\Thermo Instruments\TNG\Stellar) not found. Stellar is not installed on this machine.skyfall2024-12-05 03:49Rita Chupalov2024-12-10 12:32
Chromatogram information unavailableyaoyao wang2024-12-04 18:15Nick Shulman2024-12-10 09:02
Wiff2 files of MS/MS data from SciexOSjeroen kooistra2024-12-06 01:30jeroen kooistra2024-12-10 03:57
Customs report - Peptides number per proteintania karasiewicz2024-12-09 02:12Nick Shulman2024-12-09 16:58
trouble shooting : adding a background proteomessedigh22024-12-09 13:45Nick Shulman2024-12-09 15:01
Modification filtersZimeng2024-11-26 23:40Zimeng2024-12-08 04:32
skyline full documentation file for Claude/ChatGPT/AI knowledge-baseskyfall2024-12-02 02:06skyfall2024-12-04 02:48
How to calculate signal/noise ratio for LC peaks?rangika gurunnanselage2024-12-03 16:16rangika gurunnanselage2024-12-03 17:01
Skyline failed writing error when saving .sky filesmonteb2024-12-03 11:48Brian Pratt2024-12-03 11:56
Isotope Correctionsannikasilverberg2024-12-03 09:23Brian Pratt2024-12-03 11:35
Untargeted lipidomics using Skylinenidia lauzon22024-12-03 09:17Brian Pratt2024-12-03 11:30
Error in importing raw results due to modified .skyd filehana selicova2024-12-03 11:02Brian Pratt2024-12-03 11:25
SureQuant Method developmentdarora2024-12-02 03:50darora2024-12-03 04:43
Bruker timsTOF HT ion mobility filtering resolving powerchloe baldreki2024-11-28 08:17Brian Pratt2024-12-02 13:19
Import results from FRAGPIPE to create spectrl librariesafshari12024-10-01 12:47lxiiaanog2024-12-01 23:21
GC MS Agilent importdaria makeeva2024-11-25 07:48Brian Pratt2024-11-26 13:51
how to detect peaks with the same MRM transitiona van dam2017-01-24 01:30Brian Pratt2024-11-26 11:52
MaxQuant error to build a librarymelo-braga2024-11-26 01:30Nick Shulman2024-11-26 07:28
Is it possible to optimise % HCD and % CID collision energiesalan atkins2024-11-20 12:25Nick Shulman2024-11-25 23:19
No calibration curveakhilabrai2024-11-17 03:13akhilabrai2024-11-23 22:51
Peaks being Cut-Off on Skylineachiu12024-11-22 13:27Nick Shulman2024-11-22 15:17
Peptide Uniqueness not being enforcedpliuni12024-11-21 09:23Nick Shulman2024-11-21 13:39
GPF_runs: No matches passed score filter invanyabangera2024-11-19 21:52vanyabangera2024-11-20 23:33
Can different scan filters (e.g. HCD or CID) of the same precursor be separated?alan atkins2024-11-20 12:31Nick Shulman2024-11-20 12:59
Error when Merging Skyline Documents with Same Target lists, when using iRT moleculesWill Thompson2024-11-19 14:12Nick Shulman2024-11-19 16:22
Issue, with skyline candidate peaks.anirudhkashyap5112024-11-19 10:28Nick Shulman2024-11-19 13:46
Waters Xevo G2 QTof raw file errorbruce376612024-11-17 18:17Nick Shulman2024-11-19 10:00
Using Surrogate internal standardjihyunk2024-10-31 14:14Harrison Kim2024-11-19 09:56
Set non-specific digestion for the Background proteomelxiiaanog2024-11-19 03:00lxiiaanog2024-11-19 03:00
Importing DIA-NN spectral libraries into Skylineyuxing xue2024-11-07 02:19yuxing xue2024-11-18 08:11
LOD and LOQ calculationa das2024-11-16 04:49Nick Shulman2024-11-16 08:43
initiator methionine peptidedkueltz2016-01-11 01:34skyfall2024-11-15 08:45
Creating & naming spectral libraries from ssl files via command lineJonas Becker2024-11-13 10:18Nick Shulman2024-11-13 13:45
Importing lists of peptides using SkylineRunner.exe / CMDJonas Becker2024-09-09 08:25Jonas Becker2024-11-13 09:27
Assigning peak colors for small molesculessarah williams2020-08-06 15:50Nick Shulman2024-11-12 22:03
Analyte concentration to heavya das2024-11-11 20:54a das2024-11-12 06:53
New DIA-PASEF method process with DIANN and export to skylineJeromeVia2024-10-14 06:05JeromeVia2024-11-12 01:17
Issue with the spectral library buildingAnjana2024-11-06 02:51Nick Shulman2024-11-08 09:10
Batch creation of SCIEX methodskerteszv2024-11-05 13:45kerteszv2024-11-06 08:19