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Error SpectrumList_mzXML
CoB
2023-02-03
CoB
2023-02-07
In Targeted Method Refinement Tutorial I keep Getting a Corrupt RAW file error
sorenf
2023-02-01
sorenf
2023-02-06
Retention times do not fit with scan times in ID picker
staab-weijnitz
2023-01-27
staab-weijnitz
2023-02-06
No quantification data on isotopically labelled internal standard
wangn2
2023-02-06
Nick Shulman
2023-02-06
Skyline compatibility with GC-QTOF
higgi022
2023-01-05
Brian Pratt
2023-02-06
Skyline integrates low signal peak but exports a zero value
halwaseem
2023-02-02
Nick Shulman
2023-02-02
Spectrum IDs
paul.derbyshire@tsl.ac.uk
2023-02-01
Nick Shulman
2023-02-02
DIA results from SCIEX 7600 zenoTOF instrument
lorrain
2023-02-02
lorrain
2023-02-02
Instructions for normalizing with TIC
dave lee-2
2023-02-02
Nick Shulman
2023-02-02
Fitting cross-linked peptides to an iRT scale
Juan C. Rojas E.
2023-01-16
Nick Shulman
2023-01-31
Showing Chromatogram information unavailable after importing results
mnissa
2023-01-30
Nick Shulman
2023-01-30
Exporting isolation list for Thermo Eclipse
mnissa
2023-01-30
mnissa
2023-01-30
Click to peak chromatographic peak broken?
Juan C. Rojas E.
2023-01-30
Brendan MacLean
2023-01-30
Not seen glycopeptides working with data from MSFRagger (DDA MS1 filtering)
cpavan
2023-01-18
cpavan
2023-01-27
Split retention time window
dennisjakob
2023-01-27
Nick Shulman
2023-01-27
Finding unique peptides
prajita
2023-01-23
prajita
2023-01-24
Skyline can't load the interact-*.pep.xml and *_uncalibrated.mgf files from FragPipe 19.1 coupled with MSFragger 3.7
fcyu
2023-01-18
fcyu
2023-01-24
the problem of merging skyline documents with one raw data in different spectral libraries
zhao
2023-01-19
Nick Shulman
2023-01-22
Skyline not opening
henry
2023-01-19
Nick Shulman
2023-01-19
Defining Isolation Schemes for Bruker timsTOF DIA data
Premy
2023-01-13
Brendan MacLean
2023-01-18
Raw CCS values and Overriding with Explicit IM Values
Premy
2023-01-05
Premy
2023-01-13
Windows 10 22H2 and Windows 11 22H2 Compatibility
taperez
2023-01-11
Nick Shulman
2023-01-11
Import FASTA file
prajita
2022-12-19
prajita
2023-01-10
Non-Canonical Amino Acid
lulmer
2022-10-24
Nick Shulman
2023-01-10
Skyline Batch error if decimal symbol is a comma
roman sakson
2023-01-06
roman sakson
2023-01-09
Selecting Prosit in Library Match window results in unexpected error
tmaile
2023-01-04
tmaile
2023-01-05
Issue in Spectral Library building from Timstof pro data (dda .d files)
suresh choudhary
2023-01-05
Nick Shulman
2023-01-05
Skyline for crosslinked peptides MSe Waters data analysis
floriana capuano28104
2023-01-05
Nick Shulman
2023-01-05
Opening DIA for small molecules ((bbCID (MS/MS) and MS)) from Bruker impact II
mohamed kaddah
2023-01-03
Nick Shulman
2023-01-03
Modifications for MSGF+ search within Skyline; chemical formulas don't seem to be accepted
kvancott2
2023-01-01
kvancott2
2023-01-01
Using R script in Skyline Batch
schen19
2021-08-27
roman sakson
2022-12-27
Calculation of asymmetry factor and tailing factor of chromatographic peaks
Juraj_Lenco
2019-08-06
roman sakson
2022-12-27
Feature request: color dotP labels based-on value
gabe
2020-04-06
Brendan MacLean
2022-12-26
Document Grid: Molecules missing Predicted Retention Time and/or Average Measured Retention Time when using a Spectral library
jtsorren
2022-12-13
Nick Shulman
2022-12-21
Internal standard, relative response factor and quantification
naymin saw
2022-12-20
Nick Shulman
2022-12-20
An error occurred trying to download Skyline
amahan
2022-12-19
Nick Shulman
2022-12-19
An error occurred trying to download 'https://skyline.gs.washington.edu/software/Skyline-release-64_4_2/Skyline.application'.
kguehrs
2019-01-22
amahan
2022-12-19
XIC overlay
sstoychev23513
2022-12-16
sstoychev23513
2022-12-16
AutoQC-no updating of raw files
danielacgranato
2022-12-16
Nick Shulman
2022-12-16
Generating GC-MS "transition list" from .msp
brynnsundberg
2022-12-14
Brian Pratt
2022-12-16
files with dual polarity
naymin saw
2022-12-09
Nick Shulman
2022-12-15
Keyboard Shortcuts
thomlau
2011-09-16
tg
2022-12-13
Spectronaut assay library import failed
Rita
2022-12-08
Rita
2022-12-13
Negative transitions (and precursor) of a peptide
dilip singh
2022-12-12
Brian Pratt
2022-12-12
Bibliospec not recognize modification from PLGS file
jcaceresvergara
2022-12-02
jcaceresvergara
2022-12-08
DDA search hangs on "Running percolater..." with a specific FASTA file
Remco van Soest
2022-09-20
a kotronoulas
2022-12-08
Skyline on apple IOS
New to Skyline
2022-12-08
New to Skyline
2022-12-08
MGF files with product ion charges are ignored during spectral library build
jtsorren
2022-12-01
jtsorren
2022-12-07
Error message: Failure opening - "the file contains an error on line 13438 at column 9"
katherine wongtrakul-kish
2022-12-06
katherine wongtrakul-kish
2022-12-06
SureQuant with two FAIMS CV voltages on Orbitrap Fusion Lumos - ZigZag shaped peaks on Skyline
aheinone
2022-08-11
tej nishtala
2022-12-05
Waters Synapt G2-Si - multiple issues to access CCS values
nicolas macorps
2022-08-31
Brian Pratt
2022-12-05
Gas-phase-fractionation and iRT
Joerg
2022-11-18
Joerg
2022-12-05
New to SkyLine- In silico
New to Skyline
2022-11-29
New to Skyline
2022-12-05
Results found 2 samples instead of 34 samples from the msms file
yael hirschberg
2022-12-02
Nick Shulman
2022-12-02
timsTOF Scheduled PRM Data Import
robwsprung
2020-02-19
heather eastwood
2022-12-01
Prosit Server Unavailable with Skyline Latest Version
cm748
2022-12-01
Nick Shulman
2022-12-01
Enhancement Requests: Filter a Range of Fold Changes and Multi-Proteome Homologous Peptide Filtering
philip remes
2022-11-30
philip remes
2022-11-30
BS3: how to insert in two peptides, which are probably cross-linked, two different site of BS3 modification?
francesca grassiscalvini
2022-11-30
Nick Shulman
2022-11-30
Orbitrap library
MS-SZAOmics
2022-11-28
MS-SZAOmics
2022-11-29
Removing Redundant Transitions
eajarett
2022-11-28
Nick Shulman
2022-11-28
Molecule mode - Spectral Library Build
jtsorren
2022-11-27
jtsorren
2022-11-28
Past Releases?
nate
2022-11-23
nate
2022-11-23
Problem with Import or Search of TMT Labeled Peptides
philip remes
2022-11-22
philip remes
2022-11-22
MS2 Quantitation with Orbitrap ddMS2 Data
johnny perez28236
2022-11-21
Nick Shulman
2022-11-21
Issue with loading transition list with deuterium as H'1 in formula for newer Skyline version
j3 menzel
2022-11-12
Brian Pratt
2022-11-16
Cannot read Bruker .d without TIMS enable
ho-tak lau
2022-11-15
ho-tak lau
2022-11-15
Unaligned retention time issue
dominik kopczynski28488
2022-11-14
Nick Shulman
2022-11-15
Error during import DIANN .speclib as library
ziyue wang
2022-11-14
Nick Shulman
2022-11-14
Exploris PRM data import issue
wal mair
2022-11-10
wal mair
2022-11-11
Partial missing fragment ion exracted from FAIMS-DIA file by skyline
Winnie
2022-11-08
Nick Shulman
2022-11-10
Library Build for SILAC labelled PTM spectra from MetaMorephus mzID and mzML files ERROR No spectra were found for the new library.
gwitek
2022-09-21
Matt Chambers
2022-11-10
Issue with Protter Tool
dilip singh
2022-11-10
Nick Shulman
2022-11-10
ERROR: Failed to find required column named 'file'.
zzhu248
2022-05-26
Nick Shulman
2022-11-10
SSL_ERROR
ebru9679
2022-11-08
ebru9679
2022-11-10
Unable to use 'External Tool' feature
dilip singh
2022-11-07
dilip singh
2022-11-09
export protein-peptide list from skyline
kmsd
2022-11-07
Nick Shulman
2022-11-07
Latest CIRT library
Brett Phinney
2022-11-03
Brett Phinney
2022-11-03
Exporting scheduled method for collision energy optimisation
matthew daly
2022-10-17
Kaipo Tamura
2022-11-03
export dot p result between MIDAS vs Library
heyang
2022-11-02
heyang
2022-11-02
Error retrieving chromatogram "UV 1"
licky lck
2022-11-01
Brian Pratt
2022-11-01
Rugged extracted ion chromogram of targeted peptide precursors from FAIMS-DIA file by Skyline.
Winnie
2022-10-30
Winnie
2022-11-01
Can't connect to prosit server
sp807
2022-10-27
sp807
2022-10-31
Skyine-Daily failing due to application error thrown on Windows 2016
hchandler
2022-10-22
Brendan MacLean
2022-10-28
Using an earlier version of MSstats
susannah hallal
2022-10-27
susannah hallal
2022-10-27
Determination of LOD and LOQ using the height of the peak and the background signal amplitude
gomesrja
2022-10-25
Nick Shulman
2022-10-26
High Energy DT Offset
sxu374
2022-10-20
sxu374
2022-10-24
Sciex SWATH data we see precursor response but not fragments
jlaycock
2022-10-21
Nick Shulman
2022-10-21
Using software for MacBook user
mhossai9
2022-10-21
mhossai9
2022-10-21
Target peptide monitoring using DDA Orbi-Lumos LFQ data
kmsd
2022-10-19
Nick Shulman
2022-10-19
I can't choose my quantification ion
antonin padioleau
2022-10-11
Brian Pratt
2022-10-19
Problems importing Bruker MRMS data
dennisjakob
2022-03-07
dennisjakob
2022-10-18
Peptide Identification using DIA SWATH Data
gomesrja
2022-10-17
Nick Shulman
2022-10-17
Q Exactive method export
ad6628
2022-10-14
Nick Shulman
2022-10-16
Mobility filtering and data importing issues
mmgadz
2022-10-11
Brendan MacLean
2022-10-14
Custom fragment ion for ECD
ankittjain89
2022-10-12
ankittjain89
2022-10-13
Q executive method
ad6628
2022-10-13
ad6628
2022-10-13
Collision Energy for Thermo Altis
Gao
2022-10-12
Gao
2022-10-12
MRM assay development
ad6628
2022-10-12
ad6628
2022-10-12
Command line to set the peptide as a global standard
jianqiaoshen
2022-10-08
jianqiaoshen
2022-10-11
Multiple precursors library match
Juan C. Rojas E.
2022-10-11
Nick Shulman
2022-10-11