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Error SpectrumList_mzXMLCoB2023-02-03CoB2023-02-07
In Targeted Method Refinement Tutorial I keep Getting a Corrupt RAW file errorsorenf2023-02-01sorenf2023-02-06
Retention times do not fit with scan times in ID pickerstaab-weijnitz2023-01-27staab-weijnitz2023-02-06
No quantification data on isotopically labelled internal standardwangn22023-02-06Nick Shulman2023-02-06
Skyline compatibility with GC-QTOFhiggi0222023-01-05Brian Pratt2023-02-06
Skyline integrates low signal peak but exports a zero valuehalwaseem2023-02-02Nick Shulman2023-02-02
Spectrum IDspaul.derbyshire@tsl.ac.uk2023-02-01Nick Shulman2023-02-02
DIA results from SCIEX 7600 zenoTOF instrumentlorrain2023-02-02lorrain2023-02-02
Instructions for normalizing with TICdave lee-22023-02-02Nick Shulman2023-02-02
Fitting cross-linked peptides to an iRT scaleJuan C. Rojas E.2023-01-16Nick Shulman2023-01-31
Showing Chromatogram information unavailable after importing resultsmnissa2023-01-30Nick Shulman2023-01-30
Exporting isolation list for Thermo Eclipsemnissa2023-01-30mnissa2023-01-30
Click to peak chromatographic peak broken?Juan C. Rojas E.2023-01-30Brendan MacLean2023-01-30
Not seen glycopeptides working with data from MSFRagger (DDA MS1 filtering)cpavan2023-01-18cpavan2023-01-27
Split retention time windowdennisjakob2023-01-27Nick Shulman2023-01-27
Finding unique peptidesprajita2023-01-23prajita2023-01-24
Skyline can't load the interact-*.pep.xml and *_uncalibrated.mgf files from FragPipe 19.1 coupled with MSFragger 3.7fcyu2023-01-18fcyu2023-01-24
the problem of merging skyline documents with one raw data in different spectral librarieszhao2023-01-19Nick Shulman2023-01-22
Skyline not openinghenry2023-01-19Nick Shulman2023-01-19
Defining Isolation Schemes for Bruker timsTOF DIA dataPremy2023-01-13Brendan MacLean2023-01-18
Raw CCS values and Overriding with Explicit IM ValuesPremy2023-01-05Premy2023-01-13
Windows 10 22H2 and Windows 11 22H2 Compatibilitytaperez2023-01-11Nick Shulman2023-01-11
Import FASTA fileprajita2022-12-19prajita2023-01-10
Non-Canonical Amino Acidlulmer2022-10-24Nick Shulman2023-01-10
Skyline Batch error if decimal symbol is a commaroman sakson2023-01-06roman sakson2023-01-09
Selecting Prosit in Library Match window results in unexpected errortmaile2023-01-04tmaile2023-01-05
Issue in Spectral Library building from Timstof pro data (dda .d files)suresh choudhary2023-01-05Nick Shulman2023-01-05
Skyline for crosslinked peptides MSe Waters data analysisfloriana capuano281042023-01-05Nick Shulman2023-01-05
Opening DIA for small molecules ((bbCID (MS/MS) and MS)) from Bruker impact IImohamed kaddah2023-01-03Nick Shulman2023-01-03
Modifications for MSGF+ search within Skyline; chemical formulas don't seem to be acceptedkvancott22023-01-01kvancott22023-01-01
Using R script in Skyline Batchschen192021-08-27roman sakson2022-12-27
Calculation of asymmetry factor and tailing factor of chromatographic peaksJuraj_Lenco2019-08-06roman sakson2022-12-27
Feature request: color dotP labels based-on valuegabe2020-04-06Brendan MacLean2022-12-26
Document Grid: Molecules missing Predicted Retention Time and/or Average Measured Retention Time when using a Spectral libraryjtsorren2022-12-13Nick Shulman2022-12-21
Internal standard, relative response factor and quantificationnaymin saw2022-12-20Nick Shulman2022-12-20
An error occurred trying to download Skylineamahan2022-12-19Nick Shulman2022-12-19
An error occurred trying to download 'https://skyline.gs.washington.edu/software/Skyline-release-64_4_2/Skyline.application'.kguehrs2019-01-22amahan2022-12-19
XIC overlaysstoychev235132022-12-16sstoychev235132022-12-16
AutoQC-no updating of raw filesdanielacgranato2022-12-16Nick Shulman2022-12-16
Generating GC-MS "transition list" from .mspbrynnsundberg2022-12-14Brian Pratt2022-12-16
files with dual polaritynaymin saw2022-12-09Nick Shulman2022-12-15
Keyboard Shortcutsthomlau2011-09-16tg2022-12-13
Spectronaut assay library import failedRita2022-12-08Rita2022-12-13
Negative transitions (and precursor) of a peptidedilip singh2022-12-12Brian Pratt2022-12-12
Bibliospec not recognize modification from PLGS filejcaceresvergara2022-12-02jcaceresvergara2022-12-08
DDA search hangs on "Running percolater..." with a specific FASTA fileRemco van Soest2022-09-20a kotronoulas2022-12-08
Skyline on apple IOSNew to Skyline2022-12-08New to Skyline2022-12-08
MGF files with product ion charges are ignored during spectral library buildjtsorren2022-12-01jtsorren2022-12-07
Error message: Failure opening - "the file contains an error on line 13438 at column 9"katherine wongtrakul-kish2022-12-06katherine wongtrakul-kish2022-12-06
SureQuant with two FAIMS CV voltages on Orbitrap Fusion Lumos - ZigZag shaped peaks on Skylineaheinone2022-08-11tej nishtala2022-12-05
Waters Synapt G2-Si - multiple issues to access CCS valuesnicolas macorps2022-08-31Brian Pratt2022-12-05
Gas-phase-fractionation and iRTJoerg2022-11-18Joerg2022-12-05
New to SkyLine- In silicoNew to Skyline2022-11-29New to Skyline2022-12-05
Results found 2 samples instead of 34 samples from the msms fileyael hirschberg2022-12-02Nick Shulman2022-12-02
timsTOF Scheduled PRM Data Importrobwsprung2020-02-19heather eastwood2022-12-01
Prosit Server Unavailable with Skyline Latest Versioncm7482022-12-01Nick Shulman2022-12-01
Enhancement Requests: Filter a Range of Fold Changes and Multi-Proteome Homologous Peptide Filteringphilip remes2022-11-30philip remes2022-11-30
BS3: how to insert in two peptides, which are probably cross-linked, two different site of BS3 modification?francesca grassiscalvini2022-11-30Nick Shulman2022-11-30
Orbitrap libraryMS-SZAOmics2022-11-28MS-SZAOmics2022-11-29
Removing Redundant Transitionseajarett2022-11-28Nick Shulman2022-11-28
Molecule mode - Spectral Library Buildjtsorren2022-11-27jtsorren2022-11-28
Past Releases?nate2022-11-23nate2022-11-23
Problem with Import or Search of TMT Labeled Peptidesphilip remes2022-11-22philip remes2022-11-22
MS2 Quantitation with Orbitrap ddMS2 Datajohnny perez282362022-11-21Nick Shulman2022-11-21
Issue with loading transition list with deuterium as H'1 in formula for newer Skyline versionj3 menzel2022-11-12Brian Pratt2022-11-16
Cannot read Bruker .d without TIMS enableho-tak lau2022-11-15ho-tak lau2022-11-15
Unaligned retention time issuedominik kopczynski284882022-11-14Nick Shulman2022-11-15
Error during import DIANN .speclib as libraryziyue wang2022-11-14Nick Shulman2022-11-14
Exploris PRM data import issuewal mair2022-11-10wal mair2022-11-11
Partial missing fragment ion exracted from FAIMS-DIA file by skylineWinnie2022-11-08Nick Shulman2022-11-10
Library Build for SILAC labelled PTM spectra from MetaMorephus mzID and mzML files ERROR No spectra were found for the new library.gwitek2022-09-21Matt Chambers2022-11-10
Issue with Protter Tooldilip singh2022-11-10Nick Shulman2022-11-10
ERROR: Failed to find required column named 'file'.zzhu2482022-05-26Nick Shulman2022-11-10
SSL_ERRORebru96792022-11-08ebru96792022-11-10
Unable to use 'External Tool' featuredilip singh2022-11-07dilip singh2022-11-09
export protein-peptide list from skylinekmsd2022-11-07Nick Shulman2022-11-07
Latest CIRT libraryBrett Phinney2022-11-03Brett Phinney2022-11-03
Exporting scheduled method for collision energy optimisationmatthew daly2022-10-17Kaipo Tamura2022-11-03
export dot p result between MIDAS vs Libraryheyang2022-11-02heyang2022-11-02
Error retrieving chromatogram "UV 1"licky lck2022-11-01Brian Pratt2022-11-01
Rugged extracted ion chromogram of targeted peptide precursors from FAIMS-DIA file by Skyline.Winnie2022-10-30Winnie2022-11-01
Can't connect to prosit serversp8072022-10-27sp8072022-10-31
Skyine-Daily failing due to application error thrown on Windows 2016hchandler2022-10-22Brendan MacLean2022-10-28
Using an earlier version of MSstatssusannah hallal2022-10-27susannah hallal2022-10-27
Determination of LOD and LOQ using the height of the peak and the background signal amplitudegomesrja2022-10-25Nick Shulman2022-10-26
High Energy DT Offsetsxu3742022-10-20sxu3742022-10-24
Sciex SWATH data we see precursor response but not fragmentsjlaycock2022-10-21Nick Shulman2022-10-21
Using software for MacBook usermhossai92022-10-21mhossai92022-10-21
Target peptide monitoring using DDA Orbi-Lumos LFQ datakmsd2022-10-19Nick Shulman2022-10-19
I can't choose my quantification ionantonin padioleau2022-10-11Brian Pratt2022-10-19
Problems importing Bruker MRMS datadennisjakob2022-03-07dennisjakob2022-10-18
Peptide Identification using DIA SWATH Datagomesrja2022-10-17Nick Shulman2022-10-17
Q Exactive method exportad66282022-10-14Nick Shulman2022-10-16
Mobility filtering and data importing issuesmmgadz2022-10-11Brendan MacLean2022-10-14
Custom fragment ion for ECDankittjain892022-10-12ankittjain892022-10-13
Q executive methodad66282022-10-13ad66282022-10-13
Collision Energy for Thermo AltisGao2022-10-12Gao2022-10-12
MRM assay developmentad66282022-10-12ad66282022-10-12
Command line to set the peptide as a global standardjianqiaoshen2022-10-08jianqiaoshen2022-10-11
Multiple precursors library matchJuan C. Rojas E.2022-10-11Nick Shulman2022-10-11