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Doubts about transition list gabidap  2024-03-27 06:46
 

Hello, I trying insert a transition list with M+H-H2O as adduct, but i receive the error message " calls for removing more O atoms than are found in the molecule" . What can be wrong in my list?
Many thanks
 
 
Brian Pratt responded:  2024-03-27 08:25

Could we have a look at the actual transition list?

Thanks for using the Skyline support board,

Brian Pratt
 
gabidap responded:  2024-03-27 08:35

Shure! This is the lines with error
 
Brian Pratt responded:  2024-03-27 08:47

The problem is that Skyline wants to subtract H2O from the chemical formula for your molecule, but there isn't a formula - the molecule is described only as its mass.

That's a bug - in this case Skyline should just subtract the mass of H20 for the m/z calculation. I will make sure this is corrected in the next Skyline Daily.

Thanks for letting us know!

Brian
 
BT responded:  2024-07-08 05:48

I hope its ok to piggy back off of the original post. I'm having the same issue as OP. Any update on a potential bug fix?

Many thanks
 
Brian Pratt responded:  2024-07-08 09:25

Which version of Skyline are you using? This should be working in the the current Skyline-Daily 24.0.9.184 (172889ea9b). If it isn't working for you, please provide an example transition list and we'll get it sorted out.

Thanks for using the Skyline support board,

Brian Pratt