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Add compound ID in addition to the Molecule Name to Skyline

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Add compound ID in addition to the Molecule Name to Skyline nbekhti  2024-05-05 12:40
 

Hey Skyline team,

I would like to add to my list of metabolites an internal ID (not an HMDB, kegg.. IDs) and would like to be able to export it with the data at the end of the processing.
I tried to use HMDB ID column but as it is not in the same format it shows an error message. I also tried to use Molecule or Molecule Note, but when exporting the data it does not export that info on the molecule.

Is there a way to enter internal IDs in addition to the molecule name and be able to export them at the end of the processing?
Thank you,

Nihel Bekhti.
 
 
Nick Shulman responded:  2024-05-05 19:43
What do you mean by "exporting the data"?

One way to export data from Skyline is to create a custom report and export it using the menu item "File > Export > Report".
Skyline reports are extremely flexible and you could create a report template that includes the data that you want.
You can learn about Skyline reports here:
https://skyline.ms/wiki/home/software/Skyline/page.view?name=tutorial_custom_reports

I am not sure whether this answers your question or whether you were asking about something else.
-- Nick