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Guidance Required on Exporting mzIdentML File from Skylinecvadival2025-05-09 07:51cvadival2025-05-13 06:08
peak pickingheyang2025-05-12 15:02Nick Shulman2025-05-12 20:48
ddMS2 (LC-QExactive, Orbitrap by Thermo)yohan seol2025-05-09 07:09Nick Shulman2025-05-12 08:33
Normalization Using Heavy Internal Standardweitmanm2025-05-06 10:43Nick Shulman2025-05-12 08:26
GC-MS SIM: Molecules and Fragments not foundstefanie orter2025-02-18 05:54kdharmon05112025-05-09 22:26
Oxonium ion profilesmmakrid2025-04-29 11:19Juan C. Rojas E.2025-05-09 04:06
PRM-Quantificationakhilabrai2025-05-07 08:06akhilabrai2025-05-08 02:49
Integration thresholda rocher2025-04-01 23:02Nick Shulman2025-05-07 07:01
IQ-X mzML files cannot be readYasin2025-05-04 05:33Matt Chambers2025-05-06 12:24
Request for Assistance with Chromatogram Export Functionalities11507679642025-04-09 01:27SebastianM2025-05-06 09:10
not enough transition ionscreitzel2025-04-30 07:16creitzel2025-05-06 06:38
timsTOF Bruker error Maximum expected frame size exceeded.a l hipgrave ederveen2025-02-24 07:50a l hipgrave ederveen2025-05-05 23:38
skyline can not read the LC information of .lcd file as MRM for peptidefengleink2025-05-05 22:19fengleink2025-05-05 22:19
Issue with utilizing MSInspectoredoud2023-08-25 12:28edoud2025-05-05 11:53
Standards with different concentrations for analytessheher mohsin2025-04-30 16:19sheher mohsin2025-05-03 16:27
Guidance on Exporting mzTab or mzIdentML from Skyline for PRIDE Submissioncvadival2025-05-02 08:43cvadival2025-05-02 08:43
Creating spectral library using dia-PASEF data from timsTOF HTrmokoena12025-05-02 07:53rmokoena12025-05-02 07:53
Bruker diaPASEF .d import failure: Failed importing results file [...]'16495.d'. error reading spectrum merged=15875 frame=5716 scanStart=1 scanEnd=702Lindsay Pino2025-04-16 10:01Matt Chambers2025-05-01 08:14
Peak Integration: PRMowagne22025-04-29 13:42owagne22025-04-30 09:26
Q-value in groupwise comparisonsnreimers2025-04-24 17:10Nick Shulman2025-04-29 19:30
Adding Precursor [M-1] trace to all precursors by defaultsean jensen2024-04-25 21:39Nick Shulman2025-04-24 20:19
Agilent LCMS 6495D methods using a template method specifying large molecule iFunnel mode are exported with standard mode specified.mmarx2025-04-24 09:44Rita Chupalov2025-04-24 13:16
How to import .resultsbfp into Skyline to create a peptide libraryshivangi awasthi154182025-04-24 09:12Nick Shulman2025-04-24 09:54
Uploading timstof files to create skyline librarysusmitaghosh1919962025-04-17 03:43Nick Shulman2025-04-23 07:45
Connecting file name information to list annotationedoud2025-04-22 17:54edoud2025-04-23 06:44
import of parquet spectral library from DIANN 2.0 and above into skylinedkueltz2025-04-15 22:52dkueltz2025-04-17 10:15
timsTOF PASEF PRM Import Issuesrobwsprung2025-04-15 08:18robwsprung2025-04-15 12:15
Quantitative Proteomics with Skyline courseanhdao darcy2025-04-11 13:43Mike MacCoss2025-04-13 11:25
EncyclopeDIA errorsscott132025-04-11 09:54Nick Shulman2025-04-11 11:17
Normalization Methodsjaedon sadler2025-04-11 08:33jaedon sadler2025-04-11 08:33
Avant Garde R Package Installation Failuresgoulding2023-10-05 14:05lincolnh2025-04-10 14:30
DIA-NN .speclib supportTobi2020-05-27 03:03Daniel Fochtman2025-04-09 03:07
Global peptide, can't see the options described in the previous answeryurubi2025-04-08 13:07yurubi2025-04-08 15:14
About AlphaPeptDeep predicted spectral libraryma ziliang from tp2025-04-07 22:49ma ziliang from tp2025-04-07 22:49
95 % Confidence interval for LODZac2025-04-07 07:24Mike MacCoss2025-04-07 08:13
Inserting 15N-labeled products into Skylinechemistry Jedi2025-04-07 00:58Brian Pratt2025-04-07 02:14
No digestionPP2025-04-04 10:42Nick Shulman2025-04-04 10:55
Quantification for small molecules by using C of IS without cal. curveismailovadh2025-03-18 02:50Nick Shulman2025-04-04 07:42
DIA setup problemgor bazoyan2025-03-03 16:46gor bazoyan2025-04-03 10:34
pasting peptide sequences associated with a particular proteinpavel shliaha2025-04-03 04:35pavel shliaha2025-04-03 08:55
export all chromatograms visualisation from skylineismailovadh2025-04-03 07:06Nick Shulman2025-04-03 07:18
skyline openning dia-nn data seems sloweva borras2025-04-03 02:51eva borras2025-04-03 02:51
problems with NIST library mspismailovadh2025-03-31 04:20ismailovadh2025-04-03 01:49
opening.d files on skylineNBL2025-03-24 04:29Nick Shulman2025-04-02 16:56
Data Normalization with Heavy Peptide along with Global StandardDhaval Patel2025-03-31 15:12Nick Shulman2025-03-31 20:04
No chromatograms when importing Spectronaut file into Skylinetang yun2025-03-31 18:33Nick Shulman2025-03-31 19:30
QQQ with transition list - Chromaogram information unavailablejihyunk2025-03-31 13:19Nick Shulman2025-03-31 14:41
DDA with triple quadrupolegioele_vi2025-03-14 05:40gioele_vi2025-03-31 01:49
Error importing GNPS spectrum librarygioele_vi2025-03-14 07:35gioele_vi2025-03-31 01:43
Error importing data (Agilent 6410B): Data Not found - deviceNameOrdinalNumbergioele_vi2025-02-25 08:03gioele_vi2025-03-31 01:41
Exporting scheduled MRM method to *.exp Masslynxper larsson2024-02-01 09:05per larsson2025-03-29 15:53
Error during import fileswlgus002612025-03-28 10:30wlgus002612025-03-28 13:05
GC MS Agilent importdaria makeeva2024-11-25 07:48Philipp Ternes2025-03-28 02:54
IBAQ protein standardsmvm352025-03-26 09:04Nick Shulman2025-03-26 09:30
Skyline for small molecules : MS/MS visualisationoceane delos2025-03-25 08:28Nick Shulman2025-03-26 08:02
Skyline does not recognize peptide peakerbutler2025-03-25 08:32Nick Shulman2025-03-25 15:11
error with re-opening skyline filesbella bruszel2025-03-25 05:01Nick Shulman2025-03-25 10:53
Avant-garde - a sommelier for label-free PRM?tete07232025-03-25 07:27Brian Pratt2025-03-25 09:29
Segemented MRM - Batch Scriptanirudhkashyap5112025-03-24 08:59Nick Shulman2025-03-24 09:21
Edit > Manage Results > Renamelwolfe_colostate2016-10-12 11:54Nick Shulman2025-03-23 21:18
Is there a way to import search results from compound discoverer?licky lck2025-03-21 05:05licky lck2025-03-23 04:26
Cal curves at different concentrationsg blanco262022025-03-21 13:47Nick Shulman2025-03-21 14:03
Peptide quantification with single point internal calibrationahat erpan2025-03-21 08:59Nick Shulman2025-03-21 10:11
Import speclib from DIANN with customized non-unimod modificationsgianin thomann2024-04-23 04:20Matt Chambers2025-03-21 08:24
Can you import a UV trace too?baileyls2025-03-20 06:40Nick Shulman2025-03-20 15:08
List of instruments not visible in Instrument Tab under Transition Settingsvipinj19852025-03-19 05:38Mike MacCoss2025-03-19 13:18
Skyline-Ardia Linkjaedon sadler2025-03-18 14:05Nick Shulman2025-03-18 14:19
dot p value from which MS2 spectraheyang2025-03-18 13:11Nick Shulman2025-03-18 14:16
No matching mod for PTM when using MaxQuantjonas elsborg2025-03-13 09:59jonas elsborg2025-03-18 04:50
Quant with internal standard for small moleculessheher mohsin2025-03-17 10:56sheher mohsin2025-03-18 00:05
accuracy of light and heavy precursors differing by 1 Da onlyrameshkr2025-02-28 04:02Nick Shulman2025-03-17 21:51
Peak Area Ratio to Heavy Calculationerints2025-03-14 13:58erints2025-03-17 11:42
noise level of a peakheyang2025-03-13 09:40heyang2025-03-17 07:34
Saving Skyline filesJoerg2025-03-17 01:48Nick Shulman2025-03-17 04:55
Target small moleculea das2025-03-16 00:48Nick Shulman2025-03-16 18:18
Custom Modifications using SkylineRunner/CMD?dominickyeo2025-03-14 19:10Nick Shulman2025-03-15 10:54
PRM conductor Importing error "Index was outside the bounds of the array"7047433622025-03-15 06:13Nick Shulman2025-03-15 10:31
Error by file openingalessandra tozzi12025-03-14 04:10Nick Shulman2025-03-14 05:20
No target proteins after FASTA importlincolnh2025-03-13 08:42lincolnh2025-03-13 12:24
Error: All of the external standards are missing one or more peaksszczepankaluzny2025-03-12 09:03szczepankaluzny2025-03-13 08:40
Retention Times > Molecule Comparison Graph: Show one Molecule List onlyhelmi2025-03-12 07:29helmi2025-03-12 08:14
Chromatogram information unavailablePa Nic 142024-02-23 13:02Nick Shulman2025-03-11 11:29
FAIMS data processing in Skylinesofani72025-03-10 15:05Brian Pratt2025-03-11 11:25
Understanding lines and shade in skyline fileheyang2025-03-10 12:22heyang2025-03-11 05:47
Small Molecule Analysis and Calibration Curveweitmanm2025-03-04 12:55weitmanm2025-03-10 17:28
Reporting MS1 monoisotopic peak areas in document/reportsweaver42025-03-10 09:11Nick Shulman2025-03-10 09:31
Chromatogram Information Unavailablesjmzy232025-03-08 06:27sjmzy232025-03-08 10:52
Inquiry on Bottom-Up Analysis Using Skyline for Protein/Peptide Identificationwei ng22025-03-06 18:18Nick Shulman2025-03-06 18:55
Quantification query!VM262025-03-04 21:54VM262025-03-05 21:44
PFAS EPA Method 1633 Quantification Using Internal Standardshknguyen2025-03-05 10:38hknguyen2025-03-05 10:38
DDA searchNBL2025-02-20 08:17Nick Shulman2025-03-05 07:57
Agilent (GC) MS (Single Quad) data import / processingj d bleeker2025-03-04 05:41j d bleeker2025-03-05 06:01
rdotp score implementationTY2025-03-03 23:47Nick Shulman2025-03-04 21:12
Polarity mismatch error during import of polarity-switching raw filep ivanov2025-03-01 00:44Brian Pratt2025-03-03 12:52
Skyline-daily unplugged v24.1.1.398Juan C. Rojas E.2025-03-02 05:26Juan C. Rojas E.2025-03-03 02:20
background heightrameshkr2025-03-01 12:21Mike MacCoss2025-03-01 19:14
How to analyze prm-PASEF data with Skyline using spectral library exported from Spectronaut and bypass iRTboxi2025-02-27 17:25boxi2025-02-28 14:45
Problem importing External Tool Skyline daily on Windows 11david schmidt2025-02-27 09:18david schmidt2025-02-28 07:42
Absolute quantification and 2 peptidesmvm352025-02-26 12:13Mike MacCoss2025-02-26 15:15
Viewing Area for One Transitionnoah borland2025-02-26 10:10noah borland2025-02-26 10:10