| | | | | | | | |
| 943 | Defect | Skyline | Importing BLIB into IMSDB, we should take mean of multiple IM values instead of creating multiple entries | Brian Pratt | 3 | open | |
| 942 | Todo | Skyline | Add Start Time and End Time to spectrum properties | Rita Chupalov | 3 | open | 23.1 |
| 941 | Defect | Skyline | Red and green dots in Targets tree should be customizable colors, or different shapes | Mark Belanger | 3 | open | |
| 940 | Defect | AutoQC | Add sample file filtering option to AutoQC Loader | Vagisha Sharma | 3 | open | |
| 939 | Defect | Skyline | Off-by-one in Enzyme.GetMatches() dealing with protein C-terminus | Guest | 3 | closed | 23.1 |
| 938 | Defect | Skyline | Add property sheets to spectrum graphs | Rita Chupalov | 2 | open | 23.1 |
| 937 | Defect | Skyline | DIA Umpire tests are much slower for languages with a comma decimal separator | Matt Chambers | 2 | open | 23.1 |
| 936 | Todo | Skyline | Thermo Eclipse and Fusion Lumos method export | Kaipo Tamura | 3 | resolved | 23.1 |
| 935 | Defect | Skyline | Capture injection time as sample-scoped chromatogram | Brendan MacLean | 3 | open | |
| 934 | Todo | Skyline | Enable optimization method export for more TOF instruments | Kaipo Tamura | 2 | open | |
| 933 | Todo | Skyline | Thorium method export | Kaipo Tamura | 2 | open | |
| 932 | Todo | TestResults | Summarize/graph pass1 iteration count for tests | Kaipo Tamura | 4 | open | |
| 931 | Todo | Skyline | Agilent MH 12 method export | Kaipo Tamura | 2 | open | |
| 930 | Todo | Skyline | Export isolation list (DIA) for Bruker timsTOF | Kaipo Tamura | 4 | open | |
| 929 | Defect | Skyline | When explicit ion mobility values are used, the reported CCS value should be adjusted appropriately in the resulting chromatogram extractions | Brian Pratt | 3 | open | |
| 928 | Defect | Skyline | AssumptionException saving document with protein groups sometimes | Guest | 2 | closed | 23.1 |
| 927 | Defect | Skyline | Bibliospec - retain fragment charge values in MGF files | Brian Pratt | 3 | open | |
| 926 | Todo | Skyline | Implement Bruker Paser support in BlibBuild | Matt Chambers | 2 | open | 23.1 |
| 925 | Defect | Skyline | Targets view hangs during mouse-over with peptides longer than 2000 or so | Nick Shulman | 3 | open | |
| 924 | Defect | Skyline | Fix ability to provide a protein description in Edit > Insert > Peptides | Nick Shulman | 3 | open | |
| 923 | Todo | Skyline | Implement an interface that allows for multiple algorithms to do peak group assignment | Nick Shulman | 3 | open | |
| 922 | Defect | Skyline | Edit > Find needs to use LongWaitDlg and support cancel | Nick Shulman | 3 | open | 23.1 |
| 921 | Todo | Skyline | Transition list reader should identify special ions by m/z the same way it does calculated peptide fragment ions | Brian Pratt | 3 | open | |
| 920 | Defect | Skyline | When Group By fails in replicate comparison graphs you lose the Order By menu item | Nick Shulman | 3 | open | 23.1 |
| 919 | Defect | Skyline | SpectrumLibraryInfoDlg scoring columns should match library build columns | Brendan MacLean | 3 | resolved | 23.1 |
| 918 | Defect | Skyline | a few issues with "Use Results" in ion mobility libraries | Brian Pratt | 3 | open | 23.1 |
| 917 | Defect | Skyline | Ion mobility high energy offset should be applied for all Full Scan MS/MS modes, not just All Ions DIA | Guest | 3 | closed | 23.1 |
| 916 | Documentation | Skyline | Document normalization methods | Nick Shulman | 2 | open | 22.2 |
| 915 | Defect | Skyline | Library Match and Full-Scan - Right-click menu item order is broken in 22.2 | Guest | 2 | closed | 22.2 |
| 914 | Defect | Skyline | Proteomics features still showing in small molecule mode | Brian Pratt | 3 | open | 23.1 |
| 913 | Todo | Skyline | Make Ctrl-A work in Import > Results form to select all files in a folder | Brendan MacLean | 3 | open | 22.2 |
| 912 | Defect | Skyline | Auto-Zoom X Axis > Best Peak does nothing for chromatograms with removed peaks | Kaipo Tamura | 3 | open | 23.1 |
| 911 | Defect | Skyline | Calibration Curve graph calculates concentrations on double-blanks (NaN or infinity) | Nick Shulman | 3 | open | 23.1 |
| 910 | Defect | Skyline | Synchonized integration has trouble with removed peaks | Brendan MacLean | 3 | resolved | 23.1 |
| 909 | Defect | Skyline | Red dots for dotp values below the cut-off appear behind bars | Guest | 3 | closed | 23.1 |
| 908 | Todo | Skyline | Command Line Enhancement Request : Include MS/MS Filtering Options | Brian Pratt | 3 | open | 23.1 |
| 907 | Defect | Skyline | ViewLibraryDlg right-click menu lagging behind Library Match right-click menu | Guest | 2 | closed | 23.1 |
| 906 | Defect | Skyline | A few details working with Bruker PASER assay library lists | Brian Pratt | 3 | open | 22.2 |
| 905 | Defect | Skyline | IndexOutOfRangeException bringing up GraphFullScan immediately after modifying the document | Rita Chupalov | 3 | resolved | 22.2 |
| 904 | Defect | Skyline | Store more spectrum and instrument information in .blib files when possible | Matt Chambers | 2 | open | 23.1 |
| 903 | Defect | Skyline | Show names of default settings, and save settings with document when exporting a transition list | Kaipo Tamura | 3 | open | 22.2 |
| 902 | Todo | Skyline | add an ion mobility range filter in Transition Settings IM tab similar to instrument settings tab's mz range filter | Brian Pratt | 3 | open | |
| 901 | Defect | Skyline | Newly added annotations don't show up in the Rule Editor | Nick Shulman | 3 | open | 22.2 |
| 900 | Defect | Skyline | Opening a .skyp file shows no progress until the file is downloaded | Vagisha Sharma | 3 | open | 22.2 |
| 899 | Todo | Skyline | Adding targets from DDA library seems useful to be able to specify a number of runs a peptide got ID'd in | Matt Chambers | 3 | open | 23.1 |
| 898 | Defect | Skyline | Record the Document Grid selection in the Undo/Redo buffer during Document Grid editing events | Brendan MacLean | 3 | resolved | 22.2 |
| 897 | Todo | Skyline | Make Ctrl-Z (Undo) and Ctrl-Y (Redo) work in Document Grid | Brendan MacLean | 2 | resolved | 22.2 |
| 896 | Defect | Skyline | IMS library "Use Results" should ignore poor quality chromatographic peaks | Brian Pratt | 3 | open | |
| 895 | Todo | Skyline | "Split Graphs" equivalent (stacked MS1 and MS/MS views) for Full Scan view | Brian Pratt | 3 | open | |
| 894 | Todo | Skyline | Make "Use Results" isolation scheme work for Import > Peptide Search of DIA | Kaipo Tamura | 2 | open | 22.2 |
| 893 | Todo | Skyline | Need a way to turn off switching replicates in retention times - regression plot | Rita Chupalov | 3 | open | 22.1 |
| 892 | Defect | Skyline | Export > Transition / Isolation List with scheduling seems broken for counting multiple methods | Guest | 1 | closed | 21.2 |
| 891 | Defect | Skyline | Adjusting peak boundaries with non-quantitative transitions is confusing | Nick Shulman | 3 | open | 22.2 |
| 890 | Defect | Skyline | Audit log Skyline Version upgrade | Kaipo Tamura | 3 | open | 22.1 |
| 889 | Todo | Skyline | Make more instrument parameters available on Files in the Document Grid | Matt Chambers | 3 | open | 22.1 |
| 888 | Defect | Skyline | File > Import > Peptide Search with existing library reports the build settings in the Audit Log | Brendan MacLean | 2 | resolved | 22.2 |
| 887 | Defect | Skyline | Smooth handling of .skyp file for server lacking credentials | Vagisha Sharma | 3 | open | 22.1 |
| 886 | Defect | Skyline | AutoQC Loader stops scrolling log text area after a wrapped line | Vagisha Sharma | 3 | open | 22.1 |
| 885 | Defect | Skyline | Dotp line graph points should be clickable for changing the active replicate | Guest | 3 | closed | 22.1 |
| 884 | Defect | Skyline | Some user are really unhappy that they can't type transition lists into Skyline like they used to do | Brian Pratt | 3 | open | |
| 883 | Documentation | Skyline | Update tutorials with new library building interface | Guest | 2 | closed | |
| 882 | Todo | Skyline | Clean out apparent IMS related cruft in Full Scan tab | Guest | 3 | closed | |
| 881 | Defect | Skyline | Move Bruker timsTOF method export into BuildMethod | Kaipo Tamura | 3 | open | |
| 880 | Todo | Skyline | SSL format changes for Feature Detection | Brian Pratt | 3 | open | 22.1 |
| 879 | Defect | Skyline | Need some way to show user FAIMS information in raw scan view, to demystify jagged chromatograms before IM filters are applied | Brian Pratt | 3 | open | |
| 878 | Defect | Skyline | Need to handle retention time shifts for deuterated internal standards | Brian Pratt | 3 | open | |
| 877 | Defect | Skyline | "How Skyline Calculates Peak Areas and Heights" tip could use updating | Brendan MacLean | 3 | open | |
| 876 | Defect | Skyline | Typo in "Skyline Small Molecule Method Development and CE Optimization" tutorial | Nat Brace | 3 | open | |
| 875 | Defect | Skyline | The adduct pick list (as used in Modify... in Targets tree) should include [M+] and [M-] | Guest | 3 | closed | |
| 874 | Defect | Skyline | Default Win32 MAX_PATH value of 260 is too small for some users | Brian Pratt | 3 | open | |
| 873 | Defect | Skyline | Feature request: single molecule/peptide re-integration | Brendan MacLean | 3 | open | |
| 872 | Defect | Skyline | Document created by an m/z-only transition list should not depend on list order | Guest | 3 | closed | 22.1 |
| 871 | Defect | Skyline | Clean up the interaction of small molecule transition list imports and Transition Settings that affect precursor isotope ([M+1], [M+2] etc) creation | Brian Pratt | 1 | open | 22.1 |
| 870 | Todo | Skyline | Implement special peak statistics for DDA MS/MS | Guest | 1 | closed | 22.2 |
| 869 | Todo | Skyline | Add a Prosit RT calculator parallel to SSRCalc | Kaipo Tamura | 3 | open | |
| 868 | Todo | Skyline | Consider generating a dictionary of less common isotopes instead of hardcoding them piecemeal in response to user requests | Brian Pratt | 3 | open | |
| 867 | Todo | Skyline | Possible Improvements to Edit>Insert>TransitionList | Brian Pratt | 3 | open | 22.1 |
| 866 | Defect | Skyline | Provide option in Skyline to upload a minimized library to Panorama | Guest | 3 | closed | 22.1 |
| 865 | Defect | Skyline | Adding heavy mods in Peptide Settings does not add "Ratio to Heavy" normalization to Quantification tab | Guest | 1 | closed | 21.2 |
| 864 | Defect | Skyline | Various issues reading this small molecule transition list with heavy label formulas | Guest | 3 | closed | 22.1 |
| 863 | Defect | Skyline | Problem loading a small mol document with isotope labels - Skyline complains that they aren't known modifications (which should not matter) | Guest | 3 | closed | 22.1 |
| 862 | Defect | Skyline | "Importing Results..." window should resize its multi-file progress control when there's a vertical scrollbar in use (currently cuts off the "Cancel" buttons and looks funny) | Guest | 3 | closed | 22.1 |
| 861 | Todo | Skyline | Implement better peptide to protein assignment strategies for target selection | Matt Chambers | 2 | open | 22.1 |
| 860 | Defect | Skyline | Support more than one fragment specification per line in transition list column picker, for small molecules at least | Brian Pratt | 3 | open | |
| 859 | Defect | Skyline | Add peak apex CCS to Transition Result | Nick Shulman | 3 | open | 22.1 |
| 858 | Defect | Skyline | make "ImportPeptideSearch with the IMS filtering visible" a form view that can be shown in the SkylineTester Forms tab | Guest | 3 | closed | 22.1 |
| 857 | Defect | Skyline | ImportTransitionListColumnSelectDlg lags a bit when associate proteins checked | Brendan MacLean | 3 | resolved | 21.2 |
| 856 | Defect | Skyline | When training a "Default" peak scoring model, the model should be able to use feature scores that are present for some but not all peptides | Guest | 3 | closed | 22.1 |
| 855 | Defect | Skyline | Log scale with median normalization does not mention the normalization in the y-axis label | Brendan MacLean | 3 | resolved | 22.2 |
| 854 | Defect | Skyline | Peak Areas - Replicate Comparison - Normalize to strangely chooses poorly | Brendan MacLean | 2 | resolved | 21.2 |
| 853 | Defect | Skyline | Remove peak should make dotp annotations and line missing | Guest | 1 | closed | 21.2 |
| 852 | Defect | Skyline | Full-Scan graph no longer auto-scales the y-axis when clicking arrow buttons | Brendan MacLean | 2 | resolved | 21.2 |
| 851 | Todo | Skyline | Rename auto trained peak scoring models | Kaipo Tamura | 3 | open | 22.1 |
| 850 | Defect | Skyline | Fix performance issue with ion moblity filtering in library viewer | Brian Pratt | 3 | open | 22.1 |
| 849 | Defect | Skyline | Failure opening .sky file saying audit log entry has been modified | Brendan MacLean | 2 | resolved | 21.2 |
| 848 | Defect | Skyline | Show a better error message if check for Panorama server fails | Vagisha Sharma | 1 | open | 23.1 |
| 847 | Defect | Skyline | Add option to use explicit RT instead of measured for exporting scheduled methods | Kaipo Tamura | 3 | open | |
| 846 | Defect | Skyline | Trouble exporting polarity-switching QQQ method from Skyline to Agilent-6495C | Kaipo Tamura | 3 | open | |
| 845 | Defect | Skyline | User says Agilent 6495C can go down to a dwell time of 0.5ms, but we insist on integer dwell times in UI | Kaipo Tamura | 3 | open | |
| 844 | Defect | Skyline | Libraries should load without error even if the directory that the library is in is not writeable. | Guest | 2 | closed | 21.2 |