Tips

2025-06-30

Here are a few tips too short to be a full tutorial, but which may be helpful nonetheless. This is a partial list, check the "Pages" menu on the right for more.

  • Adduct Descriptions
  • Working with Other Quantitative Tools
  • How to Display Multiple Peptides
  • Terminology Cheat Sheet
  • How Skyline Builds Spectral Libraries
  • ID Annotations Missing with Mascot Search Results
  • DIA Configuration for Thermo Q Exactive Instruments
  • How Skyline Calculates Peak Areas and Heights
  • Support for Bruker TOF Instruments
  • Recovering From a Broken Installation
  • Sharing MS/MS Spectra with Manuscripts
  • Share Skyline Documents in Manuscripts
  • Export SRM Methods for a Thermo LTQ
  • Skyline Lists
  • Pivot Editor
  • Result File Rules