Day 1: Biological significance of targeted proteomics experiments
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Dr. Ruedi Eebersold
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Keynote session "Design and Biological Significance of Targeted Proteomic Experiments” with Dr. Ruedi Aebersold (ETH).
![](https://skyline.gs.washington.edu/labkey/wiki/home/software/Skyline/events/2014%20EMBO%20Course/download.view?entityId=8c7f8f9f-92b7-1032-9a14-da2025828f32&name=YouTube_small.png)
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Dr. Eduard Sabidó
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Tutorial/practical demonstration “Introduction to Targeted Proteomics Workflows” with Dr. Eduard Sabidó (CRG).
![](https://skyline.gs.washington.edu/labkey/wiki/home/software/Skyline/events/2014%20EMBO%20Course/download.view?entityId=8c7f8f9f-92b7-1032-9a14-da2025828f32&name=YouTube_small.png)
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![](/labkey/wiki/home/software/Skyline/events/2014%20EMBO%20Course/download.view?entityId=8c7f8f9f-92b7-1032-9a14-da2025828f32&name=Brendan_MacLean.jpg)
Brendan MacLean
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Tutorial/practical demonstration “Skyline: Software Suite for Targeted Proteomics” with Brendan MacLean (Univ. of Washington).
![](https://skyline.gs.washington.edu/labkey/wiki/home/software/Skyline/events/2014%20EMBO%20Course/download.view?entityId=8c7f8f9f-92b7-1032-9a14-da2025828f32&name=YouTube_small.png)
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Day 2: How to get optimal targeted proteomics assays?
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![](/labkey/wiki/home/software/Skyline/events/2014%20EMBO%20Course/download.view?entityId=8c7f8f9f-92b7-1032-9a14-da2025828f32&name=Cristina_Chiva.jpg)
Dr. Cristina Chiva
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Tutorial/practical demonstration “Instrument and Method Parameter Optimization for Targeted Proteomics” with Dr. Cristina Chiva (CRG).
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![](/labkey/wiki/home/software/Skyline/events/2014%20EMBO%20Course/download.view?entityId=8c7f8f9f-92b7-1032-9a14-da2025828f32&name=Olga_Schubert.jpg)
Dr. Olga Schubert
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Tutorial/Practical demonstration “Scheduled Targeted Methods and iRT Standards” with Dr. Olga Schubert (ETH).
![](https://skyline.gs.washington.edu/labkey/wiki/home/software/Skyline/events/2014%20EMBO%20Course/download.view?entityId=8c7f8f9f-92b7-1032-9a14-da2025828f32&name=YouTube_small.png)
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Day 3: Data interpretation and statistical analysis |
![](/labkey/wiki/home/software/Skyline/events/2014%20EMBO%20Course/download.view?entityId=8c7f8f9f-92b7-1032-9a14-da2025828f32&name=Olga_Vitek.jpg)
Prof. Olga Vitek
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Keynote session “Experimental Design and Statistics for Targeted Proteomics” with Prof. Olga Vitek (Northeastern University).
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![](/labkey/wiki/home/software/Skyline/events/2014%20EMBO%20Course/download.view?entityId=8c7f8f9f-92b7-1032-9a14-da2025828f32&name=Meena_Choi.png)
Meena Choi
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Tutorial/Practical demonstrations “Statistical Analysis with MSstats” with Meena Choi (Purdue University).
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![](/labkey/wiki/home/software/Skyline/events/2014%20EMBO%20Course/download.view?entityId=8c7f8f9f-92b7-1032-9a14-da2025828f32&name=Christina_Ludwig.jpg)
Dr. Christina Ludwig
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Tutorial/Practical demonstration "Absolute Quantitation in Targeted Proteomics Studies" with Dr. Christina Ludwig (ETH).
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Day 4: Turning targeted proteomics high-throughput I |
![](/labkey/wiki/home/software/Skyline/events/2014%20EMBO%20Course/download.view?entityId=8c7f8f9f-92b7-1032-9a14-da2025828f32&name=Ludovic_Gillet.jpg)
Dr. Ludovic Gillet
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Keynote session “Targeted Data Extraction of the MS/MS Spectra Generated by Data-Independent Acquisition: a new concept for consistent and accurate proteome analysis” with Dr. Ludovic Gillet (ETH).
![](https://skyline.gs.washington.edu/labkey/wiki/home/software/Skyline/events/2014%20EMBO%20Course/download.view?entityId=8c7f8f9f-92b7-1032-9a14-da2025828f32&name=YouTube_small.png)
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![](/labkey/wiki/home/software/Skyline/events/2014%20EMBO%20Course/download.view?entityId=8c7f8f9f-92b7-1032-9a14-da2025828f32&name=Ariel_Bensimon.jpg)
Ariel Bensimon
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Tutorial/Practical demonstration “Monitoring Phosphorylations by Targeted Proteomics” with Ariel Bensimon (ETH).
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![](/labkey/wiki/home/software/Skyline/events/2014%20EMBO%20Course/download.view?entityId=8c7f8f9f-92b7-1032-9a14-da2025828f32&name=Ludovic_Gillet.jpg)
Dr. Ludovic Gillet
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Tutorial/Practical demonstration “Generation of Libraries for the Identification in Mass Specotmetry Data-Independent Datasets” with Dr. Ludovic Gillet (ETH).
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![](/labkey/wiki/home/software/Skyline/events/2014%20EMBO%20Course/download.view?entityId=8c7f8f9f-92b7-1032-9a14-da2025828f32&name=Olga_Schubert.jpg)
Dr. Olga Schubert
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Keynote session “The Quantitative Proteome of Mycobacterium Tuberculosis by Targeted Mass Spectrometry” with Dr. Olga Schubert (ETH).
![](https://skyline.gs.washington.edu/labkey/wiki/home/software/Skyline/events/2014%20EMBO%20Course/download.view?entityId=8c7f8f9f-92b7-1032-9a14-da2025828f32&name=YouTube_small.png)
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Day 5: Turning targeted proteomics high-throughput II |
![](/labkey/wiki/home/software/Skyline/events/2014%20EMBO%20Course/download.view?entityId=8c7f8f9f-92b7-1032-9a14-da2025828f32&name=Michael_MacCoss.jpg)
Prof. Michael MacCoss
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Keynote session “Design and Biological Significance of Targeted Proteomics Experiments: PRM and MSX” with Prof. Michael MacCoss (Univ. of Washington).
![](https://skyline.gs.washington.edu/labkey/wiki/home/software/Skyline/events/2014%20EMBO%20Course/download.view?entityId=8c7f8f9f-92b7-1032-9a14-da2025828f32&name=YouTube_small.png)
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