Dear Nick,
Thx for the reply. Here the error msg:
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Skyline
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ERROR: unable to handle mod in library entry: AAAHHYGAQC(Unimod:4)DK3
ERROR: reading file Swissprot_HSapiens-BSA_lib.tsv.speclib
Command-line: C:\Users\bio\AppData\Local\Apps\2.0\85E7K1EH.CDH\TM9Z0EW0.O9E\skyl..tion_9286511f3362df93_0017.0001_cdc87d1507aa7380\BlibBuild -s -A -H -v warn -o -c 0.95 -i GT240313_c_Skyline -S "E:\THOG\GT240313_c\Skyline\GT240313_c-Skyline.redundant202404240847.stdin.txt" "E:\THOG\GT240313_c\Skyline\GT240313_c-Skyline.redundant.blib"
Working directory: E:\THOG\GT240313_c\Skyline
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OK More Info
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System.IO.IOException: ERROR: unable to handle mod in library entry: AAAHHYGAQC(Unimod:4)DK3
ERROR: reading file Swissprot_HSapiens-BSA_lib.tsv.speclib
Command-line: C:\Users\bio\AppData\Local\Apps\2.0\85E7K1EH.CDH\TM9Z0EW0.O9E\skyl..tion_9286511f3362df93_0017.0001_cdc87d1507aa7380\BlibBuild -s -A -H -v warn -o -c 0.95 -i GT240313_c_Skyline -S "E:\THOG\GT240313_c\Skyline\GT240313_c-Skyline.redundant202404240847.stdin.txt" "E:\THOG\GT240313_c\Skyline\GT240313_c-Skyline.redundant.blib"
Working directory: E:\THOG\GT240313_c\Skyline
at pwiz.Common.SystemUtil.ProcessRunner.Run(ProcessStartInfo psi, String stdin, IProgressMonitor progress, IProgressStatus& status, TextWriter writer, ProcessPriorityClass priorityClass, Boolean forceTempfilesCleanup, Func`3 outputAndExitCodeAreGoodFunc, Boolean updateProgressPercentage) in C:\proj\skyline_23_1\pwiz_tools\Shared\Common\SystemUtil\ProcessRunner.cs:line 181
at pwiz.BiblioSpec.BlibBuild.BuildLibrary(LibraryBuildAction libraryBuildAction, IProgressMonitor progressMonitor, IProgressStatus& status, String& commandArgs, String& messageLog, String[]& ambiguous) in C:\proj\skyline_23_1\pwiz_tools\Shared\BiblioSpec\BlibBuild.cs:line 433
at pwiz.Skyline.Model.Lib.BiblioSpecLiteBuilder.BuildLibrary(IProgressMonitor progress) in C:\proj\skyline_23_1\pwiz_tools\Skyline\Model\Lib\BiblioSpecLiteBuilder.cs:line 161
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Sorry for not providing the full set. The needed files are attached.
Maybe I have to add that I also tried to define <static_modification> in the .sky file via text editor as suggested in this community request:
https://skyline.ms/announcements/home/support/thread.view?rowId=6945
It seems that skyline accepts the modifications (no error msg) but the import still fails (modified .sky also in zip)
Gianin