Save error after DIA generation of assay list | dkueltz | 2023-04-30 | |||||||||||||||
Hi, I am generating a new DIA assay list by opening Skyline and choosing the import dia peptide search option, the using an existing blib. The process works fine and the final assay list looks great with all spectra showing properly, etc. However when I try to save the Skyline file I get the following error: System.Reflection.TargetInvocationException ---> pwiz.Skyline.Util.AssumptionException at pwiz.Skyline.Util.Assume.Fail(String error) in C:\proj\skyline_22_2\pwiz_tools\Skyline\Util\Util.cs:line 2080 at pwiz.Skyline.Model.Serialization.DocumentWriter.WritePeptideGroupXml(XmlWriter writer, PeptideGroupDocNode node) in C:\proj\skyline_22_2\pwiz_tools\Skyline\Model\Serialization\DocumentWriter.cs:line 154 at pwiz.Skyline.Model.Serialization.DocumentWriter.WriteXml(XmlWriter writer) in C:\proj\skyline_22_2\pwiz_tools\Skyline\Model\Serialization\DocumentWriter.cs:line 71 at pwiz.Skyline.Model.SrmDocument.Serialize(XmlTextWriter writer, String displayName, SkylineVersion skylineVersion, IProgressMonitor progressMonitor) in C:\proj\skyline_22_2\pwiz_tools\Skyline\Model\SrmDocument.cs:line 2263 at pwiz.Skyline.Model.SrmDocument.SerializeToFile(String tempName, String displayName, SkylineVersion skylineVersion, IProgressMonitor progressMonitor) in C:\proj\skyline_22_2\pwiz_tools\Skyline\Model\SrmDocument.cs:line 2238 at pwiz.Skyline.SkylineWindow.<>c__DisplayClass753_1.<SaveDocument>b__0(IProgressMonitor progressMonitor) in C:\proj\skyline_22_2\pwiz_tools\Skyline\SkylineFiles.cs:line 1011 at pwiz.Skyline.Controls.LongWaitDlg.RunWork(Action`1 performWork) in C:\proj\skyline_22_2\pwiz_tools\Skyline\Controls\LongWaitDlg.cs:line 254 --- End of inner exception stack trace --- at pwiz.Skyline.Util.Helpers.WrapAndThrowException(Exception x) in C:\proj\skyline_22_2\pwiz_tools\Skyline\Util\Util.cs:line 1965 at pwiz.Skyline.Controls.LongWaitDlg.PerformWork(Control parent, Int32 delayMillis, Action`1 performWork) in C:\proj\skyline_22_2\pwiz_tools\Skyline\Controls\LongWaitDlg.cs:line 202 at pwiz.Skyline.Controls.LongWaitDlg.PerformWork(Control parent, Int32 delayMillis, Action`1 performWork) in C:\proj\skyline_22_2\pwiz_tools\Skyline\Controls\LongWaitDlg.cs:line 140 at pwiz.Skyline.SkylineWindow.SaveDocument(String fileName, Boolean includingCacheFile) in C:\proj\skyline_22_2\pwiz_tools\Skyline\SkylineFiles.cs:line 1018 Is this a bug or what could be going wrong (I checked and there is no special character in the pathname and no matter what file name and path I cannot save this Skyline file)? Thanks for any suggestions, Dietmar |
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