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Import peak boundaries for small molecules

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Import peak boundaries for small molecules Juan C. Rojas E.  2022-02-10 10:38
 

Hi all,

What is the column name and formatting of the molecules I need to use so Skyline recognize molecule+file specific peak boundaries in a small molecules document?
Sincerely,
Juan C.
 
 
Nick Shulman responded:  2022-02-10 10:45
The column names that you need are "File Name","PeptideModifiedSequence","Min Start Time", "Max End Time".
You put the name of your molecule in the "PeptideModifiedSequence" column.
We should probably fix it so that you can give that column a better name if it's a small molecule peak boundary file.

You can find an example small molecule peak boundaries CSV toward the end of this support request:
https://skyline.ms/announcements/home/support/thread.view?rowId=30928
-- Nick