|Discrepancy in Skyline and Mass Lynx M/Z values||sa825||2021-10-06|
I wanted to ask why Skyline and Mass Lynx are showing different M/Z values for the same peptide.
It's a peptide with the sequence: ADCLTQCAAR. In skyline, the heavy peptide comes up as 588.2622 but in Mass Lynx, its 588.3.
I have attached some screen shots to explain. The M/Z in question is the one tagged "BCR5 ISltd" in the Mass Lynx screenshot.