Hiya,
I wanted to ask why Skyline and Mass Lynx are showing different M/Z values for the same peptide.
It's a peptide with the sequence: ADCLTQCAAR. In skyline, the heavy peptide comes up as 588.2622 but in Mass Lynx, its 588.3.
Is there a way to change the M/Z value in Skyline to match the one in Mass Lynx? As I have the results form Mass Lynx using the M/Z 588.3 and when I bring those results into skyline, the chromatograms are empty.
I have attached some screen shots to explain. The M/Z in question is the one tagged "BCR5 ISltd" in the Mass Lynx screenshot.
Thanks,
Shimon