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Integration threshold

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Integration threshold a rocher  2025-04-01 23:02
 

Hello, I'm working on the Small Molecule part of Skyline and I'd like to know how to set the integration threshold (not the display threshold). I don't want intensities below 1E4 to be integrated, for example. Thank you and have a nice day. Amandine
 
 
Brendan MacLean responded:  2025-04-02 10:29

Can you provide a clear example of what you are hoping for? Ideally a marked up screenshot showing data you would like to be handled in a different way than Skyline currently handles it.

There is not an existing feature in Skyline that comes to mind based on your request.

--Brendan
 
a rocher responded:  2025-04-06 23:40

Hello,

Please find attached a screenshot of an integrated metabolite with all isotopologues.

I would like to define an integration threshold so that intensities or areas below 10 000, for example, are noted as not detected. Currently, an area is noted in the right-hand window, whereas the integrated signal is just noise.

Thanks

Amandine