We would need some example files in the format you are looking for. In the past, we have written external tools to take Skyline reports and reformat them for exactly what another software tool is looking for.
Check out:
https://skyline.ms/tools.url
And the tools:
- MPPReport - Agilent Mass Profiler Pro
- TFExport - Thermo TraceFinder
These were both funded by the instrument vendor, but we could help the Chromeleon team or anyone else to create something similar, if a custom report cannot be formated exactly as Chromeleon is looking for.