Problem Importing pep.xml File from PeaksX Search of Waters MSe Data | dwwilk02 | 2019-10-29 11:14 | |||||||||||||||||||||
Hi, I've gotten the error message listed below in Skyline 19.1.0.193 when I try to import a pep.xml file from a PeaksX search of waters MSe data. The MSe data was converted to mzML prior to the search in PeaksX. I attached the pep.xml file that was generated by PeaksX. Thanks for any suggestions. The error message is: --------------------------- Skyline --------------------------- ERROR: peptides.pep.xml(line 3463): [Serializer_mzXML::translateSourceFileTypeToNativeIdFormat] unknown file type ERROR: Command-line: C:\Users\dwwilk02.AD\AppData\Local\Apps\2.0\VLVOVZ8Y.QJE\9QMYDTGV.WT6\skyl..tion_e4141a2a22107248_0013.0001_f6e2bff174ff9e23\BlibBuild -s -A -H -o -c 0.95 -i CytokineQuanSkylineTemplateTest191029 -S "C:\Users\dwwilk02.AD\AppData\Local\Temp\tmp2B91.tmp" "C:\Users\dwwilk02.AD\Desktop\Temp Data\Cytokine Quantification\CytokineQuanSkylineTemplateTest191029.redundant.blib" Working directory: C:\Users\dwwilk02.AD\Desktop\Synapt_MSe_Test_191001_PEAKS_91 --------------------------- OK More Info --------------------------- System.IO.IOException: ERROR: peptides.pep.xml(line 3463): [Serializer_mzXML::translateSourceFileTypeToNativeIdFormat] unknown file type ERROR: Command-line: C:\Users\dwwilk02.AD\AppData\Local\Apps\2.0\VLVOVZ8Y.QJE\9QMYDTGV.WT6\skyl..tion_e4141a2a22107248_0013.0001_f6e2bff174ff9e23\BlibBuild -s -A -H -o -c 0.95 -i CytokineQuanSkylineTemplateTest191029 -S "C:\Users\dwwilk02.AD\AppData\Local\Temp\tmp2B91.tmp" "C:\Users\dwwilk02.AD\Desktop\Temp Data\Cytokine Quantification\CytokineQuanSkylineTemplateTest191029.redundant.blib" Working directory: C:\Users\dwwilk02.AD\Desktop\Synapt_MSe_Test_191001_PEAKS_91 at pwiz.Common.SystemUtil.ProcessRunner.Run(ProcessStartInfo psi, String stdin, IProgressMonitor progress, IProgressStatus& status, TextWriter writer) in C:\proj\skyline_19_1_x64\pwiz_tools\Shared\Common\SystemUtil\ProcessRunner.cs:line 62 at pwiz.BiblioSpec.BlibBuild.BuildLibrary(LibraryBuildAction libraryBuildAction, IProgressMonitor progressMonitor, IProgressStatus& status, String[]& ambiguous) in C:\proj\skyline_19_1_x64\pwiz_tools\Shared\BiblioSpec\BlibBuild.cs:line 186 at pwiz.Skyline.Model.Lib.BiblioSpecLiteBuilder.BuildLibrary(IProgressMonitor progress) in C:\proj\skyline_19_1_x64\pwiz_tools\Skyline\Model\Lib\BiblioSpecLiteBuilder.cs:line 144 --------------------------- |
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