|SkylineRunner not importing RAW files||schen19||2019-06-07|
Hi Skyline Team,
I was trying to use the latest version of SkylineRunner to import peptide search results from Proteome Discoverer version 2.3. Everything goes smoothly and a Skyline file was generated. However, the chromatogram information is missing in the Skyline file, so I had to re-import all the RAW file again in order to get the chromatogram displayed. Although things look fine after the reimporting, I'm still hoping to solve the problem because importing a large number of raw files takes a really long time and having to import RAW files manually sort of defeats the point of using an automated pipeline...
Here is the structure of the script:
I didn't have the script for importing the raw file because the location of the raw files are in the folder specified by "--dir". I also didn't see any error message after running the script.
Please let me know if more information is needed in order to understand/solve the problem.