Compared to its predecessors, the Skyline environment is conducive to high-throughput analysis, enabling the comparison of many targets over many different conditions with relative ease. It is quickly becoming the hub of targeted proteomics method development and analysis. Many existing external tools are already integrated into the software and new tools should be. I appreciate that the development team is actively staying ahead of the curve in proteomics so that when a new tool or technique is developed, Skyline is ready to implement it for all users.

Martin Soste
Picotti Lab
ETH Zurich