| Error on line XX at column YY | nikolaos psychogios | 2025-11-12 10:49 | |||||||||||||||||||||
Dear Skyline experts, A Skyline file that I worked on last week suddenly cannot be accessed today. I tried it to open it from several computers, but I'm getting the same error message. "The file contains an error on line 491 at column 227" I noticed that other users have seen similar errors, but I'm not sure if I need to edit the relevant .sky file in Text at the specific line, column where the error appears and what exactly should I change. Any help would be appreciated. Best, Nick Below is the message generated from "More info" --------------------------- Skyline --------------------------- Failure opening Q:\Nick\Act-A_GDF-8\20251107\20251107_ActA_GDF8_C5171006_hum_serum.sky. The file contains an error on line 491 at column 227. --------------------------- OK More Info --------------------------- Skyline (64-bit) 25.1.0.142 (7401c644b4) System.Reflection.TargetInvocationException: There is an error in XML document (491, 227). ---> System.InvalidOperationException: There is an error in XML document (491, 227). ---> System.Reflection.TargetInvocationException: Exception has been thrown by the target of an invocation. ---> System.Reflection.TargetInvocationException: Exception has been thrown by the target of an invocation. ---> System.Reflection.TargetInvocationException: Exception has been thrown by the target of an invocation. ---> System.Xml.XmlException: '~', hexadecimal value 0x1A, is an invalid character. Line 491, position 227. at System.Xml.XmlTextReaderImpl.Throw(Exception e) at System.Xml.XmlTextReaderImpl.ParseAttributeValueSlow(Int32 curPos, Char quoteChar, NodeData attr) at System.Xml.XmlTextReaderImpl.ParseAttributes() at System.Xml.XmlTextReaderImpl.ParseElement() at System.Xml.XmlTextReaderImpl.ParseElementContent() at pwiz.Skyline.Model.Results.ChromatogramSet.ReadXml(XmlReader reader) in C:\proj\skyline_25_1\pwiz_tools\Skyline\Model\Results\Chromatogram.cs:line 773 at pwiz.Skyline.Model.Results.ChromatogramSet.Deserialize(XmlReader reader) in C:\proj\skyline_25_1\pwiz_tools\Skyline\Model\Results\Chromatogram.cs:line 709 --- End of inner exception stack trace --- at System.RuntimeMethodHandle.InvokeMethod(Object target, Object[] arguments, Signature sig, Boolean constructor) at System.Reflection.RuntimeMethodInfo.UnsafeInvokeInternal(Object obj, Object[] parameters, Object[] arguments) at System.Reflection.RuntimeMethodInfo.Invoke(Object obj, BindingFlags invokeAttr, Binder binder, Object[] parameters, CultureInfo culture) at System.RuntimeType.InvokeMember(String name, BindingFlags bindingFlags, Binder binder, Object target, Object[] providedArgs, ParameterModifier[] modifiers, CultureInfo culture, String[] namedParams) at pwiz.Skyline.Util.XmlElementHelper`1.Deserialize(XmlReader reader) in C:\proj\skyline_25_1\pwiz_tools\Skyline\Util\Xml.cs:line 1179 at pwiz.Skyline.Util.XmlUtil.ReadElements[TItem](XmlReader reader, List`1 list, IXmlElementHelper`1[] helpers) in C:\proj\skyline_25_1\pwiz_tools\Skyline\Util\Xml.cs:line 858 at pwiz.Skyline.Model.Results.MeasuredResults.ReadXml(XmlReader reader) in C:\proj\skyline_25_1\pwiz_tools\Skyline\Model\Results\MeasuredResults.cs:line 1322 at pwiz.Skyline.Model.Results.MeasuredResults.Deserialize(XmlReader reader) in C:\proj\skyline_25_1\pwiz_tools\Skyline\Model\Results\MeasuredResults.cs:line 1305 --- End of inner exception stack trace --- at System.RuntimeMethodHandle.InvokeMethod(Object target, Object[] arguments, Signature sig, Boolean constructor) at System.Reflection.RuntimeMethodInfo.UnsafeInvokeInternal(Object obj, Object[] parameters, Object[] arguments) at System.Reflection.RuntimeMethodInfo.Invoke(Object obj, BindingFlags invokeAttr, Binder binder, Object[] parameters, CultureInfo culture) at System.RuntimeType.InvokeMember(String name, BindingFlags bindingFlags, Binder binder, Object target, Object[] providedArgs, ParameterModifier[] modifiers, CultureInfo culture, String[] namedParams) at pwiz.Skyline.Util.XmlElementHelper`1.Deserialize(XmlReader reader) in C:\proj\skyline_25_1\pwiz_tools\Skyline\Util\Xml.cs:line 1179 at pwiz.Skyline.Util.XmlUtil.DeserializeElement[TObj](XmlReader reader, Enum name) in C:\proj\skyline_25_1\pwiz_tools\Skyline\Util\Xml.cs:line 893 at pwiz.Skyline.Model.DocSettings.SrmSettings.ReadXml(XmlReader reader) in C:\proj\skyline_25_1\pwiz_tools\Skyline\Model\DocSettings\SrmSettings.cs:line 2228 at pwiz.Skyline.Model.DocSettings.SrmSettings.Deserialize(XmlReader reader) in C:\proj\skyline_25_1\pwiz_tools\Skyline\Model\DocSettings\SrmSettings.cs:line 2204 --- End of inner exception stack trace --- at System.RuntimeMethodHandle.InvokeMethod(Object target, Object[] arguments, Signature sig, Boolean constructor) at System.Reflection.RuntimeMethodInfo.UnsafeInvokeInternal(Object obj, Object[] parameters, Object[] arguments) at System.Reflection.RuntimeMethodInfo.Invoke(Object obj, BindingFlags invokeAttr, Binder binder, Object[] parameters, CultureInfo culture) at System.RuntimeType.InvokeMember(String name, BindingFlags bindingFlags, Binder binder, Object target, Object[] providedArgs, ParameterModifier[] modifiers, CultureInfo culture, String[] namedParams) at pwiz.Skyline.Util.XmlElementHelper`1.Deserialize(XmlReader reader) in C:\proj\skyline_25_1\pwiz_tools\Skyline\Util\Xml.cs:line 1179 at pwiz.Skyline.Util.XmlUtil.DeserializeElement[TObj](XmlReader reader, Enum name) in C:\proj\skyline_25_1\pwiz_tools\Skyline\Util\Xml.cs:line 893 at pwiz.Skyline.Model.Serialization.DocumentReader.ReadXml(XmlReader reader) in C:\proj\skyline_25_1\pwiz_tools\Skyline\Model\Serialization\DocumentReader.cs:line 613 at pwiz.Skyline.Model.SrmDocument.ReadXml(XmlReader reader) in C:\proj\skyline_25_1\pwiz_tools\Skyline\Model\SrmDocument.cs:line 2159 at System.Xml.Serialization.XmlSerializationReader.ReadSerializable(IXmlSerializable serializable, Boolean wrappedAny) at Microsoft.Xml.Serialization.GeneratedAssembly.XmlSerializationReaderSrmDocument.Read1_srm_settings() --- End of inner exception stack trace --- at System.Xml.Serialization.XmlSerializer.Deserialize(XmlReader xmlReader, String encodingStyle, XmlDeserializationEvents events) at pwiz.Skyline.SkylineWindow.<>c__DisplayClass771_0.<OpenFile>b__0(IProgressMonitor progressMonitor) in C:\proj\skyline_25_1\pwiz_tools\Skyline\SkylineFiles.cs:line 325 at pwiz.Skyline.Controls.LongWaitDlg.RunWork(Action`1 performWork) in C:\proj\skyline_25_1\pwiz_tools\Skyline\Controls\LongWaitDlg.cs:line 254 --- End of inner exception stack trace --- at pwiz.Skyline.Util.Helpers.WrapAndThrowException(Exception x) in C:\proj\skyline_25_1\pwiz_tools\Skyline\Util\Util.cs:line 1926 at pwiz.Skyline.Controls.LongWaitDlg.PerformWork(Control parent, Int32 delayMillis, Action`1 performWork) in C:\proj\skyline_25_1\pwiz_tools\Skyline\Controls\LongWaitDlg.cs:line 202 at pwiz.Skyline.Controls.LongWaitDlg.PerformWork(Control parent, Int32 delayMillis, Action`1 performWork) in C:\proj\skyline_25_1\pwiz_tools\Skyline\Controls\LongWaitDlg.cs:line 140 at pwiz.Skyline.SkylineWindow.OpenFile(String path, FormEx parentWindow) in C:\proj\skyline_25_1\pwiz_tools\Skyline\SkylineFiles.cs:line 341 --------------------------- |
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