Issue 825: SDRF Reports

issues
Status:open
Assigned To:Nick Shulman
Type:Todo
Area:Skyline
Priority:3
Milestone:21.2
Opened:2021-07-26 by Nick Shulman
Changed:2021-07-26 by Nick Shulman
Resolved:
Resolution:
Closed:
2021-07-26 Nick Shulman
Title»SDRF Reports
Assigned To»Nick Shulman
Type»Todo
Area»Skyline
Priority»3
Milestone»21.2
We would like to make it easier for users to enter the data that is required for SDRF reports in Skyline.

SDRF reports look like this:
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7116434/
https://github.com/bigbio/proteomics-metadata-standard

There is a list of templates for different experiment types (human, plant, cell line etc.):
https://github.com/bigbio/proteomics-metadata-standard/tree/master/templates

There is also a "default" template that has the minimum required attributes for any proteomics experiment:
https://github.com/bigbio/proteomics-metadata-standard/blob/master/templates/sdrf-default.tsv

The value for most or all attributes has to correspond to the name of an ontology term from one of their supported vocabularies.
https://github.com/bigbio/proteomics-metadata-standard/tree/master/sdrf-proteomics#ontologies-supported