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Issue 825: SDRF Reports
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Status:
open
Assigned To:
Nick Shulman
Type:
Todo
Area:
Skyline
Priority:
3
Milestone:
23.1
Opened:
2021-07-26 14:15 by Nick Shulman
Changed:
2022-07-20 11:45 by Brendan MacLean
Resolved:
Resolution:
Closed:
2021-07-26 14:15
Nick Shulman
Title
»
SDRF Reports
Assigned To
»
Nick Shulman
Type
»
Todo
Area
»
Skyline
Priority
»
3
Milestone
»
21.2
We would like to make it easier for users to enter the data that is required for SDRF reports in Skyline.
SDRF reports look like this:
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7116434
/
https://github.com/bigbio/proteomics-metadata-standard
There is a list of templates for different experiment types (human, plant, cell line etc.):
https://github.com/bigbio/proteomics-metadata-standard/tree/master/templates
There is also a "default" template that has the minimum required attributes for any proteomics experiment:
https://github.com/bigbio/proteomics-metadata-standard/blob/master/templates/sdrf-default.tsv
The value for most or all attributes has to correspond to the name of an ontology term from one of their supported vocabularies.
https://github.com/bigbio/proteomics-metadata-standard/tree/master/sdrf-proteomics#ontologies-supported
2021-11-29 13:13
Nick Shulman
Milestone
21.2
»
22.1
2022-07-20 11:45
Brendan MacLean
Milestone
22.1
»
23.1