Issue 117: Add a SkylineRunner command-line parameter to import QC data from a directory

issues
Status:closed
Assigned To:Guest
Type:Todo
Area:Skyline
Priority:2
Milestone:1.2
Opened:2011-11-20 by Brendan MacLean
Changed:2014-04-15 by Vagisha
Resolved:2012-01-05 by Vagisha
Resolution:Fixed
Closed:2014-04-15 by Vagisha
2011-11-20 Brendan MacLean
Title»Add a SkylineRunner command-line parameter to import QC data from a directory
Assigned To»Brendan MacLean
Type»Todo
Area»Skyline
Priority»2
Milestone»1.2
It looks like Thermo instruments only allow a single global command to be executed before or after each acquisition.

To simplify setting up SkylineRunner to automatically import QC data into a document as it is collected, we need to add two new parameters to the command-line interface:

--import-all=path/to/folder

Imports from a folder all files or sub-folders which are not already in the document, naming each with the basename of the file or sub-folder, unless the --import-naming-pattern parameter is also supplied.

--import-naming-pattern=reg-ex

A regular expression from which the first group will be used to name replicates in an --import-all operation (e.g. [^_]_(.*) for everything after the first underscore.

2011-12-08 Brendan MacLean
Assigned ToBrendan MacLean»vsharma@u.washington.edu

2012-01-05 Vagisha
resolve as Fixed
Statusopen»resolved
Fixed in revision 3195.

2014-04-15 Vagisha
close
Statusresolved»closed
Assigned ToVagisha»Guest