From
https://skyline.ms/announcements/home/support/thread.view?rowId=54805 (includes example data in an excel file)
This:
Molecule list name Molecule name Precursor m/z Precursor Charge Product m/z Product Charge Label type
Compounds Mol1 430.1 1 236.1 1 light
Compounds Mol1 228.1 -1 144.1 -1 light
Should produce the same document as this:
Molecule list name Molecule name Precursor m/z Precursor Charge Product m/z Product Charge Label type
Compounds Mol1 228.1 -1 144.1 -1 light
Compounds Mol1 430.1 1 236.1 1 light
but it doesn't, at the moment. It appears that it's the polarity difference that confuses things, this works fine if charges are all declared positive.