Hello,

I'm comparing quantitation results of a small molecule with two transitions, quantitative and confirmatory, between TargetLynx and Skyline. The results are very similar but the areas I'm finding in Skyline are significantly higher than what is shown in TargetLynx. The integrations seem comparable enough that I would not see this level of discrepancy. In the included picture, is this the correct flow path to show the area for just the quantitative transition? I cannot share data files.

Any help would be appreciated!
Thanks