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Error importing data (Agilent 6410B): Data Not found - deviceNameOrdinalNumber

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Error importing data (Agilent 6410B): Data Not found - deviceNameOrdinalNumber gioele_vi  2025-02-25 08:03
 

Hi,

I am trying to import RAW data acquired from an Agilent 6410B system and I get the following error:

Failed importing results file 'D:\Skyline\Microcistine - comparazione 6410B e 8060\Agilent febbraio 2025\2025 02 20\25LA00436 Totale.d'.
[MassHunterDataImpl::getSignals()] Specified argument was out of the range of valid values.
Parameter name: Data Not found - deviceNameOrdinalNumber
pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'D:\Skyline\Microcistine - comparazione 6410B e 8060\Agilent febbraio 2025\2025 02 20\25LA00436 Totale.d'.
[MassHunterDataImpl::getSignals()] Specified argument was out of the range of valid values.
Parameter name: Data Not found - deviceNameOrdinalNumber ---> System.Exception: [MassHunterDataImpl::getSignals()] Specified argument was out of the range of valid values.
Parameter name: Data Not found - deviceNameOrdinalNumber
at pwiz.CLI.msdata.ChromatogramList.size()
at pwiz.ProteowizardWrapper.MsDataFileImpl.get_HasChromatogramData() in C:\proj\skyline_24_1\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 1265
at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in C:\proj\skyline_24_1\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 231
--- End of inner exception stack trace ---

Do you know why I am getting this error? I have imported files from such a system before (using a similar LC-MS acquisition method) and it worked before.

Gioele
 
 
Nick Shulman responded:  2025-02-25 09:46
I don't think we have seen that error before in "MassHunterDataImpl::getSignals()".

Can you zip up that "25LA00436 Totale.d" folder and send it to us?

Files which are less than 50MB can be attached to these support requests.
You can always upload larger files here:
https://skyline.ms/files.url
-- Nick
 
gioele_vi responded:  2025-02-26 07:13
Hi Nick,

Sure you can find the RAW data attached.

Best regards,

Gioele
 
gioele_vi responded:  2025-03-03 02:51
Hi Nick,

Did you had the time to check the RAW file?

Many thanks and best regards,

Gioele
 
Nick Shulman responded:  2025-03-03 10:18
ProteoWizard seems to be failing trying to get the list of chromatograms for something called "DAD1".
I will have to ask my coworkers what might be going wrong or whether there is any workaround.
-- Nick
 
Matt Chambers responded:  2025-03-28 13:06
Fixed in https://github.com/ProteoWizard/pwiz/pull/3414 (next Skyline-daily after the PR is merged)
 
gioele_vi responded:  2025-03-31 01:41
Thanks Matt for the update, appreciated.