File format conversion from raw to .sky etc

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File format conversion from raw to .sky etc sachin burange  2024-09-10 11:53
 

Dear Sir,

,sky format is propriety of MacCoss lab ? If yes, how do we convert raw file to this format ? Is .sky format can be used for AI/ML ?

Sachin

 
 
Nick Shulman responded:  2024-09-10 12:05
.sky files are XML.

Sometimes you might find it useful to look at the files using a text editor such as Notepad.
We have written an XML schema which describes what can be found in the file.
The latest version of that schema is here:
https://github.com/ProteoWizard/pwiz/blob/master/pwiz_tools/Skyline/TestUtil/Schemas/Skyline_Current.xsd

I am not sure what you mean about converting .raw files to .sky.
A Skyline document contains very different information from what you would find in a .raw file. Skyline documents contain a list of peptides and peak areas. A raw file contains mass spectra.

You can tell Skyline to extract chromatograms from a .raw file by using the "File > Import > Results" menu item in the Skyline user interface.

If you tell us more about what you are trying to accomplish we might be able to give you better advice.
-- Nick