Problem with Koina

support
Problem with Koina ericw04  2024-08-19 12:39
 

Hi Skyline team,

I am trying to run an EncyclopeDIA search through Skyline (v.Skyline (64-bit) 24.1.0.199 (6a0775ef83)) and it fails almost immediately when trying to submit my FASTA file to Koina to generate a Prosit library. A picture of the Skyline error is attached as a PNG. Any advice you have is much appreciated!

-Eric

 
 
Nick Shulman responded:  2024-08-19 13:12
You should go to:
Tools > Options
and on the "Koina" tab, choose something in both the "Intensity model" and "iRT model" dropdowns.

For privacy reasons, Skyline will not send your peptide sequences to the Koina server until you choose something in the Tools > Options dialog.

There are some places where Skyline will give you the helpful message "Koina is not properly configured. Would you like to change Koina settings now?" but it looks like that message is missing when you do "File > Search > EncyclopeDIA Search..."
-- Nick
 
ericw04 responded:  2024-08-19 13:28
Excellent. Thank you, Nick!