FAIMS CV optimization - Please Report "NA" in the Ion Mobility filtering settings for peptided with removed peak | Tobi | 2024-03-20 03:52 | |||||||||||||||||
Hi Skyline Team, when using skyline to optimize FAIMS CV, that works in principle when having having data with multiple CVs and going via From there the optimized CV values can be copy&pasted and used elsewhere, I have not managed any other way to export the optimized CV values. However, when some precursors or peptides had their peaks removed (chromatogram, righclick, remove peak), I would expect those to be listed with "NA" as optimized CV value, but they are simply missing from the ion mobility library window. This creates mismatches with the table of optimized CVs I would like to make. The copy&paste is fine, but please keep the numbers of peptides and precursors consistent with the target list, that would be a great improvement. Best, tobi |
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