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Auto QC file type lkerton  2023-09-25 09:40
 

Very, very new to Skyline, so please be gentle:

We are working on our Quality Assurance plan, and I am looking into the possibility of importing endpoint Auto QC data into our existing quality control software and want to better understand Auto QC's output. Is there an output file other than the monthly zip file that could be saved externally? And if so, what is the format or file type? Any help would be appreciated!

Thank you,

Lindsay :)
 
 
Brendan MacLean responded:  2023-09-25 12:01

Hi Lindsay,
You can always export CSV reports from Skyline itself, and there is documentation on working with reports in Skyline:

https://skyline.ms/wiki/home/software/Skyline/page.view?name=tutorial_custom_reports

They are extremely flexible and can be exported using the Skyline command-line interface. More detailed information on both can be found in the Help menu under Documentation > Reports and Command Line.

Also, if you use AutoQC to post your data to Panorama, then Panorama itself also has extensive reporting capabilities and it also can export reports in CSV or XLS format.

If you are looking for a fully automated pipeline, then you would probably want developers in your organization to look at the Skyline command-line interface and report exporting.

Hope this helps get you going in the right direction. Thanks for considering Skyline and AutoQC for use in your research and data quality assurance workflow.

--Brendan