Error uploading MSFragger DIA GPF results into Skyline | Tomas Vaisar | 2023-09-18 12:34 |
We are trying to upload MSFragger results from a search on DIA GPF, following the instruction (https://fragpipe.nesvilab.org/docs/tutorial_skyline.html) using both DDA and DIA search results workflow in Skyline. But in both cases we get error that the spectra cannot be found. We have both interact-xx.pep.xml and the mzML files in the same directory, so I am not sure what is going on. Thanks for any advice. Tomas |
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