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Error in EncyclopeDIA search rj8  2023-07-12 15:20
 
For some reason, I bombed in the prosit library bit. Here's the info:



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Skyline-daily
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Error
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OK More Info
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pwiz.Skyline.Model.Prosit.PrositNotConfiguredException: Intensity model '' does not exist
   at pwiz.Skyline.Model.Prosit.Models.PrositIntensityModel..ctor(String model) in C:\proj\skyline_23_1\pwiz_tools\Skyline\Model\Prosit\Models\PrositIntensityModel.cs:line 52
   at pwiz.Skyline.Model.Prosit.Models.PrositIntensityModel.GetInstance(String model) in C:\proj\skyline_23_1\pwiz_tools\Skyline\Model\Prosit\Models\PrositIntensityModel.cs:line 65
   at pwiz.Skyline.Model.Prosit.Models.PrositHelpers.PredictBatchesFromPrositCsv(String prositCsvFilePath, IProgressMonitor progressMonitor, IProgressStatus& progressStatus, CancellationToken token) in C:\proj\skyline_23_1\pwiz_tools\Skyline\Model\Prosit\Models\PrositModel.cs:line 408
   at pwiz.Skyline.FileUI.PeptideSearch.EncyclopeDiaSearchControl.Search(EncyclopeDiaSettings settings, CancellationTokenSource token, IProgressStatus status) in C:\proj\skyline_23_1\pwiz_tools\Skyline\FileUI\PeptideSearch\EncyclopeDiaSearchDlg.cs:line 608
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Nick Shulman responded:  2023-07-12 15:44
You need to go to:
Tools > Options
and then select the "Prosit" tab
and choose something in the "Intensity model" dropdown.

Thank you for reporting this problem. We should improve the error message so that it says "Prosit is not configured..." and tells you what to do to fix it.

Prosit is disabled by default when you first install Skyline-daily and users must explicitly turn it on because it does result in your peptide sequences being sent to the Prosit server.
-- Nick