I do not see anything that looks like a spectral library for Arabidopsis on that peptideatlas page. It certainly seems like there would be a spectral library on that web site, but all I see for that species is stuff related to DNA. I am not very familiar with any of these websites so I would not know how to find it.
I did find a library for that species on this PRIDE page:
https://www.ebi.ac.uk/pride/spectrumlibrary
The file you would download would be a .msp.gz file, so you would first need to extract it using a program such as 7-Zip and then add the .msp file to Skyline's list of libraries.
-- Nick