oriane strassel responded: |
2023-05-10 05:14 |
Update information: I run an SIM acquisition only in positive mode, and I still got the same error when trying to process
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Brian Pratt responded: |
2023-05-10 07:18 |
This is highly unusual. Can you provide a copy of the file?
Thanks,
Brian Pratt
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oriane strassel responded: |
2023-05-10 07:35 |
Thank you for your fast answer, I just uploaded the 2 files on the file sharing folder
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Brian Pratt responded: |
2023-05-10 10:24 |
This is an interesting one! The error happens as we try to read the first chromatogram after the TIC. It's declared as having polarity "mixed" - we're only used to seeing positive or negative. I'm not sure what that would even mean - and there's no way to describe that in mzML - what does it look like when viewed in Agilent software?
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Brian Pratt responded: |
2023-05-10 11:26 |
In the meantime,
msconvert --continueOnError -z D:\data\Oriane\20230510_Biphenyl_OS_MIX1SIM.d
should produce a usable mzML file if you don't care about the chromatograms.
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oriane strassel responded: |
2023-05-10 23:12 |
Hi Brian,
Data on MassHunter seems fine (see screenshot attached)
Unfortunately I wasn't able to change the file using msconvert, I still got this accessibility issue (access denied)
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Brian Pratt responded: |
2023-05-11 11:53 |
I'm not sure what you mean by accessibility issues, but that sounds like you probably just need to tell msconvert to write to a different folder.
Best,
Brian
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