I am using Skyline-Daily 22.214.171.1248, trying to import peptide search of DDA-PASEF data from MSFragger, using uncalibrated mgf files.
Although the files are in the same folder with .d files and interact-filename.mod.pep.xml files, I get the error saying the software can't find the files.
I have tried Skyline as well, the same error.
Using calibrated.mzML I can load the files but no chromatogram will be extracted eventually.
I appreciate it if you can help me on loading uncalibrated mgf files to the skyline.