Spectrum IDs

Spectrum IDs paul.derbyshire  2023-02-01

I would like to include the number of spectrum IDs per peptide when exporting a document report. For example, if I have 8 samples and each chromatogram has 1 ID then I would be looking for a value of 8.

Hope you can help.



Nick Shulman responded:  2023-02-02
There is currently no way to do this in Skyline.
We have talked about adding this as a feature because it would then make it easy to compare quantification by spectral counting to chromatogram peak areas.
For now, I think you would have to use some other tool to look at your peptide search results and tell you what the spectral counts were for each peptide.
I will look into whether it would be easy for us to add this feature to Skyline.
-- Nick