How to make skyline pick the peak with highest dot product? | pavel shliaha | 2022-04-22 13:24 | |||||||||
I am not sure how skyline picks which peak corresponds to the peptide from library (I use extremely high RT tolerance) but it picks a peak which has a low dot product (0.3-0.5), but there are other candidates which have dot product as high as 0.95 (which I think is my actual peptide). Is there a way to specify skyline to select the peak with highest dot product? NOTE: I am NOT asking about filtering on dot product score. If skyline selects a peak with dot product of 0.4, while there is a candidate which is 0.95 and I specify the threshold of 0.9 in refine > advanced > min dot product skyline simply removes the selected peak, but it does not help identify the peak with 0.95 dot product |
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