cannot find and use modifications present in unimod | pavel shliaha | 2022-03-24 08:30 | |||||||||
Unimod has shTMT modification under 2015accession. I cannot find it in the structural modification list and using V(unimod: 2015)LHSGSR returns an error. Is it possible to import this modification into my skyline --------------------------- Skyline --------------------------- Unrecognized Unimod id 2015 in modified peptide sequence V(unimod:2015)LHSGSR (amino acid 1, V(unimod:2015)). --------------------------- OK More Info --------------------------- System.FormatException: Unrecognized Unimod id 2015 in modified peptide sequence V(unimod:2015)LHSGSR (amino acid 1, V(unimod:2015)). at pwiz.Skyline.Model.ModificationMatcher.ThrowUnimodException(String seq, Int32 uniModId, Int32 indexAA, Int32 indexBracket, Int32 indexClose) in C:\proj\skyline_21_2_x64\pwiz_tools\Skyline\Model\ModificationMatcher.cs:line 396 at pwiz.Skyline.Model.ModificationMatcher.SimplifyUnimodSequence(String seq) in C:\proj\skyline_21_2_x64\pwiz_tools\Skyline\Model\ModificationMatcher.cs:line 364 at pwiz.Skyline.Model.ModificationMatcher.IsMatch(Target target, PeptideDocNode nodePep, TransitionGroupDocNode& nodeGroup) in C:\proj\skyline_21_2_x64\pwiz_tools\Skyline\Model\ModificationMatcher.cs:line 454 at pwiz.Skyline.Model.AbstractModificationMatcher.CreateDocNodeFromSettings(Target target, Peptide peptide, SrmSettingsDiff diff, TransitionGroupDocNode& nodeGroupMatched) in C:\proj\skyline_21_2_x64\pwiz_tools\Skyline\Model\AbstractModificationMatcher.cs:line 644 at pwiz.Skyline.Model.ModificationMatcher.MoveNextSequence() in C:\proj\skyline_21_2_x64\pwiz_tools\Skyline\Model\ModificationMatcher.cs:line 78 at pwiz.Skyline.Model.AbstractModificationMatcher.InitMatcherSettings(SrmSettings settings, MappedList`2 defSetStatic, MappedList`2 defSetHeavy) in C:\proj\skyline_21_2_x64\pwiz_tools\Skyline\Model\AbstractModificationMatcher.cs:line 81 at pwiz.Skyline.Model.ModificationMatcher.CreateMatches(SrmSettings settings, IEnumerable`1 sequences, MappedList`2 defSetStatic, MappedList`2 defSetHeavy, IProgressMonitor progressMonitor, IProgressStatus status) in C:\proj\skyline_21_2_x64\pwiz_tools\Skyline\Model\ModificationMatcher.cs:line 61 at pwiz.Skyline.SkylineWindow.ImportFasta(TextReader reader, Int64 lineCount, Boolean peptideList, String description, ImportFastaInfo importInfo) in C:\proj\skyline_21_2_x64\pwiz_tools\Skyline\SkylineFiles.cs:line 1629 --------------------------- |
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