CE optimization transition list export does not work

CE optimization transition list export does not work bkr  2022-03-13

Hi Skyline team,

I tried exporting the CE optimization list and it does not export the optimization list. the transition list contains only one CE.

I am attaching the skyline daily file

Nick Shulman responded:  2022-03-13
Can you send us a .sky.zip file?

In Skyline, you can use the menu item:
File > Share
to create a .zip file containing your Skyline document and supporting files including spectral libraries and background proteome.

If that .zip file is less than 50MB you can attach it to this support request. You can upload larger files here:

Can you tell us a little bit more about what went wrong? It sounds like you did:
File > Export > Transition List
and the file you got was not what it was supposed to be.

Can you send us a screenshot of your Export Transition List dialog so that we can see which settings you used? Also, it might be helpful if you could give us the transition list file that you did export.
-- Nick
bkr responded:  2022-03-13
Hi Nick,

Thanks for the response. I fixed the issue. It seems if the peptide is set as a global standard, the CE optimization transition list does not work.

Maybe it would be helpful if you can add it in the documentation to not set a peptide as global standard.