mzTab Output from Skyline

mzTab Output from Skyline mhadisur  2022-01-12


I want to upload the PRM data (manually curated) that I analyzed in Skyline into the MassIVE repository. The MassIVE repository requires the result files, such as mzIdentML and mzTab. How do I export the Skyline results in mzTab format compatible with MassIVE?

Thank you for the help!

Marco Hadisurya

Mike MacCoss responded:  2022-01-12

Hi Marco,
Did you know that Panorama Public is part of the ProteomeXchange? It makes it really easy to share your data for publication and the processed data handled by Panorama is a Skyline document.
The data can be assigned a PX ID and is indexed as part of the same system as MassIVE. If you have a Skyline document as your results it is definitely easiest to share the data in Panorama Public.

Let us know if you need any help,

Vagisha Sharma responded:  2022-01-13

Hi Marco,

As Mike said, it is easy to share Skyline documents associated with manuscripts on Panorama Public, a member repository of the ProteomeXchange Consortium. First, you will need to sign up for account on the PanoramaWeb server -
You will find more information on how to put your data on Panorama Public on this page -
Please let us know if you have any questions. You can also post your questions to the PanoramaWeb support board -


mhadisur responded:  2022-01-15

Thank you for the responses and the detailed explanation.

I already signed up for an account on the PanoramaWeb server. Currently, I think Nat Brace is helping me to get that set up. Hope to get the access by next week.

Marco Hadisurya