Merging two documents | Michael Cundell | 2022-01-12 09:45 | |||||||||||||||||||||
I am having trouble merging two documents in Skyline (64-bit) 20.1.0.31 (f09d9bed5) which is probably a result of how I created the two documents:
From this point, is there a way to merge these two documents (referred to as A and B below)? I tried file > import > Document and select "merge with existing results by replicate name". When i merge A with B, the missing peptides in A are added from B to the targets pane, but the adjusted peak boundaries and removed light labels are not brought over into A from B. Instead, I just get the original skyline peak boundaries created at import in step 2 above (I presume this is because they still reside in skyd in document A). If I do "add new replicates" instead all peak boundaries and selections are brought over from B into A fine, but this just duplicates the replicates (which are identical in both documents). I also tried exporting the peak boundaries from A and B, then concatenated those lists together in excel and reimported with file > import > peak boundaries. This gave the right windows, but all peaks had both heavy and light labels turned on (it didnt take into account we would like to preserve where we have removed a light label, to keep that light label off/removed from the specific replicates). Probably the simplest solution is to just keep the documents separate and export the peptide results from each file and merge the two output CSVs. But it would be good to know if I am missing something. Thank you for your help and a great tool. Best wishes, Michael |
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