line 6675 column 10 error | landerson | 2021-06-23 16:26 | |||||||||||||||||||||||||
Hello, I am receiving an error when I try to reopen a skyline doc I was working on the other day. I receive an error per below and attached. This is not the first time I have received the error when trying to re-open a previously saved skyline doc with results. There is no work in the document, it is completely empty. How can I recover my data that I already spend hours on QCing? Thanks, Lisa System.Reflection.TargetInvocationException: There is an error in XML document (6675, 10). ---> System.InvalidOperationException: There is an error in XML document (6675, 10). ---> pwiz.Skyline.Util.AssumptionException: error reading mz values - declared mz value 148.060434 does not match calculated value 147.07641824 at pwiz.Skyline.Util.Assume.Fail(String error) in C:\proj\skyline_21_1_x64\pwiz_tools\Skyline\Util\Util.cs:line 2055 at pwiz.Skyline.Model.Serialization.DocumentReader.ValidateSerializedVsCalculatedProductMz(Nullable`1 declaredProductMz, TransitionDocNode node) in C:\proj\skyline_21_1_x64\pwiz_tools\Skyline\Model\Serialization\DocumentReader.cs:line 1623 at pwiz.Skyline.Model.Serialization.DocumentReader.ReadTransitionXml(XmlReader reader, TransitionGroup group, ExplicitMods mods, IsotopeDistInfo isotopeDist, ExplicitTransitionValues pre422ExplicitTransitionValues, CrosslinkBuilder crosslinkBuilder) in C:\proj\skyline_21_1_x64\pwiz_tools\Skyline\Model\Serialization\DocumentReader.cs:line 1606 at pwiz.Skyline.Model.Serialization.DocumentReader.ReadTransitionListXml(XmlReader reader, TransitionGroupDocNode nodeGroup, ExplicitMods mods, ExplicitTransitionValues pre422ExplicitTransitionValues) in C:\proj\skyline_21_1_x64\pwiz_tools\Skyline\Model\Serialization\DocumentReader.cs:line 1466 at pwiz.Skyline.Model.Serialization.DocumentReader.ReadTransitionGroupXml(XmlReader reader, Peptide peptide, ExplicitMods mods) in C:\proj\skyline_21_1_x64\pwiz_tools\Skyline\Model\Serialization\DocumentReader.cs:line 1335 at pwiz.Skyline.Model.Serialization.DocumentReader.ReadTransitionGroupListXml(XmlReader reader, Peptide peptide, ExplicitMods mods) in C:\proj\skyline_21_1_x64\pwiz_tools\Skyline\Model\Serialization\DocumentReader.cs:line 1261 at pwiz.Skyline.Model.Serialization.DocumentReader.ReadPeptideXml(XmlReader reader, PeptideGroup group, Boolean isCustomMolecule) in C:\proj\skyline_21_1_x64\pwiz_tools\Skyline\Model\Serialization\DocumentReader.cs:line 908 at pwiz.Skyline.Model.Serialization.DocumentReader.ReadPeptideListXml(XmlReader reader, PeptideGroup group) in C:\proj\skyline_21_1_x64\pwiz_tools\Skyline\Model\Serialization\DocumentReader.cs:line 843 at pwiz.Skyline.Model.Serialization.DocumentReader.ReadPeptideGroupXml(XmlReader reader) in C:\proj\skyline_21_1_x64\pwiz_tools\Skyline\Model\Serialization\DocumentReader.cs:line 813 at pwiz.Skyline.Model.Serialization.DocumentReader.ReadPeptideGroupListXml(XmlReader reader) in C:\proj\skyline_21_1_x64\pwiz_tools\Skyline\Model\Serialization\DocumentReader.cs:line 654 at pwiz.Skyline.Model.Serialization.DocumentReader.ReadXml(XmlReader reader) in C:\proj\skyline_21_1_x64\pwiz_tools\Skyline\Model\Serialization\DocumentReader.cs:line 619 at pwiz.Skyline.Model.SrmDocument.ReadXml(XmlReader reader) in C:\proj\skyline_21_1_x64\pwiz_tools\Skyline\Model\SrmDocument.cs:line 1998 at System.Xml.Serialization.XmlSerializationReader.ReadSerializable(IXmlSerializable serializable, Boolean wrappedAny) at Microsoft.Xml.Serialization.GeneratedAssembly.XmlSerializationReaderSrmDocument.Read1_srm_settings() --- End of inner exception stack trace --- at System.Xml.Serialization.XmlSerializer.Deserialize(XmlReader xmlReader, String encodingStyle, XmlDeserializationEvents events) at pwiz.Skyline.SkylineWindow.<>c__DisplayClass742_0.<OpenFile>b__0(IProgressMonitor progressMonitor) in C:\proj\skyline_21_1_x64\pwiz_tools\Skyline\SkylineFiles.cs:line 328 at pwiz.Skyline.Controls.LongWaitDlg.RunWork(Action`1 performWork) in C:\proj\skyline_21_1_x64\pwiz_tools\Skyline\Controls\LongWaitDlg.cs:line 254 --- End of inner exception stack trace --- at pwiz.Skyline.Util.Helpers.WrapAndThrowException(Exception x) in C:\proj\skyline_21_1_x64\pwiz_tools\Skyline\Util\Util.cs:line 1940 at pwiz.Skyline.Controls.LongWaitDlg.PerformWork(Control parent, Int32 delayMillis, Action`1 performWork) in C:\proj\skyline_21_1_x64\pwiz_tools\Skyline\Controls\LongWaitDlg.cs:line 202 at pwiz.Skyline.Controls.LongWaitDlg.PerformWork(Control parent, Int32 delayMillis, Action`1 performWork) in C:\proj\skyline_21_1_x64\pwiz_tools\Skyline\Controls\LongWaitDlg.cs:line 140 at pwiz.Skyline.SkylineWindow.OpenFile(String path, FormEx parentWindow) in C:\proj\skyline_21_1_x64\pwiz_tools\Skyline\SkylineFiles.cs:line 345 |
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