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about pq500 analysis template

minyg98

2021-05-20 05:06

Hello I'm minyeong Ji from center for proteogenomic research in Korea University.

I should first thank you for all your service since Skyline has been very helpful for my research.

The reason why I'm writing this is because I want to get a little help from you.

I'm currently interested in doing experiments with SureQuant - PQ500 method

They say there's the PQ500 Skyline analysis template provided but I don't know where to find it.

Also, should I use Skyline-daily for the analysis of surequant survey run?

I look forward hearing from you soon

Sincerely,

Minyeong JI.

Nick Shulman responded:	2021-05-20 10:55
I do not know the answer to your question, but I will ask the people that I know at Thermo and they will probably know the answer. There is a little bit of information about how to use SureQuant with Skyline on this page, but it is probably not the information that you need: https://skyline.ms/wiki/home/software/Skyline/page.view?name=TriggeredAcquisition -- Nick

Brendan MacLean responded:	2021-05-20 11:04
Also, you should be using Skyline-daily for SureQuant, even after we make our next Skyline 21.1 release, because SureQuant support is under active development and will likely gain new features (including method export) in Skyline-daily before we release them to Skyline 21.2 in the fall.