|Skyline batch installation and use||j3 menzel||2021-04-18|
Dear Skyline team,
I often run a small molecule analysis workflow using between 40000 up to 900000 transitions and exporting results with a report template. Both reading transition lists and datasets takes a long time, so I wanted to try Skyline batch to increase the speed of getting to the report file (as I have no need to look at or manipulate results manually in Skyline in this step).
When I downloaded Skyline batch I couldn't see all the parts of the menu (in Skyline batch configuration: Files, Refine) and I couldn't run the analysis of the dataset as the process exited before saving an output file.
Once I downloaded the latest version of Skyline Batch, installation (initialization) simply fails (on various computers), despite the latest Skyline version being installed.
Could someone help me or point me towards a site with more options?
Thanks for the great support,