Peptide Atlas Download for human library build

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Peptide Atlas Download for human library build daraghob  2020-12-16
 
Hi,

I am attempting to generate a new spectral library to achieve better target peptide coverage for a transition list I am generating for a future MRM experiment.

My issue is trying to discern which file to download on the peptide atlas builds page (http://www.peptideatlas.org/builds/)
There are many options for the human build but I can't seem to find the appropriate data format (.pep.xml) for the library build.

Any help with this would be greatly appreciated.
Many thanks,
Daragh
 
 
Nick Shulman responded:  2020-12-16
Daragh,

Skyline can use libraries in the ".sptxt" format directly without going through the process of building a BilbioSpec spectral library (.blib).

To use a .sptxt library, you go to:
Settings > Peptide Settings > Edit List > Add

-- Nick