Trouble finding spectrum files - can they be input through a command line interface | jharrison | 2020-11-23 14:30 | |||||||||||||||
Hi Skyline team, Thank you for making such a useful software. I want to do some ms1 filtering in some data and I have been having some issues when I try to open the .pep.xml file. I keep getting the error message below and I do have the .mzML file in the appropriate folder. I think the issue is that I am using VMware fusion on a mac to run windows and I think it is somehow frustrating your auto search tools. I am wondering if there is a way I can pass the spectrum file into skyline through a command line interface like skyline runner. Or maybe I am doing something else silly that is giving me an issue. I am grateful for any help you can offer. System.IO.IOException: ERROR: Could not find spectrum file 'NA[.mz5|.mzML|.mzXML|.ms2|.cms2|.bms2|.pms2]' for search results file 'WT_Roos_1.pep.xml' in current directory, ../,../../. Best, |
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